Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P10
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   2.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   5.3  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    24   9.3  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 157  EAPWLRCLSSLCKLNQLASKRSFC 86
            +AP L  LS++C  +  + KR FC
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFC 990


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 295 WLTIPSSLWNSFLEVCR 245
           WL+IP+S W++F +  +
Sbjct: 507 WLSIPASRWSTFYDASK 523


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 272 LEQLSGGVQVVRWPQGVTLT*DSSRFNASARNSCFSDLRSTLAAM 138
           + +    V++   P G+T++   SR     +   F  L S LAA+
Sbjct: 272 VNRTESAVRLTHIPTGITVSMQDSRSQHQNKEKAFLVLNSRLAAL 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,541
Number of Sequences: 5004
Number of extensions: 25750
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)