Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_P10
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042 54 5e-08
12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128 29 1.2
05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912... 27 3.8
01_06_1088 - 34439311-34439987,34440080-34440136,34442790-344429... 27 3.8
10_06_0050 - 10072226-10072606 27 5.0
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 27 5.0
11_06_0659 - 25976268-25976419,25976486-25976675,25981350-259819... 27 6.6
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 27 6.6
04_01_0024 + 344621-344830,344926-345705 27 6.6
02_04_0349 + 22222091-22222639,22222718-22223695 27 6.6
>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
Length = 104
Score = 53.6 bits (123), Expect = 5e-08
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +1
Query: 100 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPW 231
WR AG+TYI YSN+ A ++RR LK+ ++EA R++ H ++ W
Sbjct: 11 WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKW 54
>12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128
Length = 344
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 171 ARISSRGVET*RISRQSHTLGPTDDLHTSRKLFQSEEGIVNQ 296
A +SS GVE +I + H L + L T + EEG+V+Q
Sbjct: 129 ALLSSDGVEIDQIREEGHDLAVGEILITDMMRKEEEEGVVDQ 170
>05_03_0169 -
9123684-9124823,9125408-9125594,9126379-9126476,
9127124-9127182,9128748-9129081
Length = 605
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = -3
Query: 284 SFFTLEQLSGGVQVVRWPQGVTLT*DSSRFNASARNSCFSDLRSTLAAMFE*FM*VKPAC 105
S+FTL+ GG+ ++ W + T++ + +A C L + +A+ F + P C
Sbjct: 519 SYFTLDMCLGGLLLLLWKKIDTMSAEILSAAVAAGLICGEGLFTLPSALLNMFKVLPPMC 578
Query: 104 LQAL 93
++ L
Sbjct: 579 MKFL 582
>01_06_1088 -
34439311-34439987,34440080-34440136,34442790-34442919,
34443499-34443740,34443857-34444008,34444381-34444461,
34444547-34444612,34444692-34444763,34444843-34444984,
34445146-34445645,34446625-34447192,34447248-34447257
Length = 898
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 115 LTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWGQRTTCTPPESCSK 273
LTY++ + ++ A+A E +R P GQR T P + SK
Sbjct: 25 LTYVSDREFVESGKSYDIMAQYMADATNEQEKTLRSFPDGQRNCYTLPTNSSK 77
>10_06_0050 - 10072226-10072606
Length = 126
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 288 LFLLHFGTAFWRCAGRPLAP 229
L +L FG A C G+P+AP
Sbjct: 14 LLILFFGCAVTNCTGKPVAP 33
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 358 LNSIIYCTILHKLIVDDFHACWLTIPSSLWN 266
L+ ++ T L +L++DD C L +PS N
Sbjct: 452 LDLLLLATDLRQLVIDDVDCCDLDVPSEFDN 482
>11_06_0659 -
25976268-25976419,25976486-25976675,25981350-25981967,
25982021-25982248,25982557-25982763
Length = 464
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -2
Query: 276 HFGTAFWRCAGRPLAPRCDSDVRFVTFQRLCSKF 175
H G WR A + RCD R V KF
Sbjct: 245 HLGATLWRLADFGASVRCDHSTRSVPADAFYGKF 278
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 126 YVS*TSLPPSAHFVNVRYLLLFSKNKVEI 40
Y S TS PS F+N+RYL + N+ EI
Sbjct: 554 YKSKTSSIPSDLFLNLRYLHVLDLNRQEI 582
>04_01_0024 + 344621-344830,344926-345705
Length = 329
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 IAAKVLRRSLKQEFRAEALKRDESHVRV-TPWGQRTTCTP 255
+ V RR +KQE RAEA K + V PW ++ P
Sbjct: 273 VTVLVERRMVKQEHRAEAYKLYQKRTSVWIPWFRKPVPQP 312
>02_04_0349 + 22222091-22222639,22222718-22223695
Length = 508
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 275 TLEQLSGGVQVVRWP 231
TLE LSGGV ++ WP
Sbjct: 406 TLESLSGGVPMLSWP 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,100,243
Number of Sequences: 37544
Number of extensions: 161392
Number of successful extensions: 426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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