Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_P07
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 93 1e-20
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 51 1e-07
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 41 1e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.002
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.45
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.8
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.8
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 3.2
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 7.3
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 9.7
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 24 9.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 24 9.7
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 93.5 bits (222), Expect = 1e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +1
Query: 139 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCXEE 315
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 88.2 bits (209), Expect = 5e-19
Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXE--EADRCYRCNG 342
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 343 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES 453
GH+ R+C SP+ CY C + GHIAR+C G++S
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQS 105
Score = 73.3 bits (172), Expect = 2e-14
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----XEEADRC 327
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 328 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEG 441
Y+C GHIAR+C + + +CY C GH AR+C G
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Score = 71.7 bits (168), Expect = 5e-14
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +1
Query: 250 RQREKCFKCNRTGHFARDCXEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 429
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 430 CP 435
CP
Sbjct: 73 CP 74
Score = 51.2 bits (117), Expect = 7e-08
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +1
Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE 450
RCY C GH AREC + CYNCN+TGH A C E +E
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE 57
Score = 33.5 bits (73), Expect = 0.016
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 385 PSCYNCNKTGHIARNCPEG 441
P CYNC + GH AR C +G
Sbjct: 17 PRCYNCGENGHQARECTKG 35
Score = 31.9 bits (69), Expect = 0.048
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 151 AMSSSVCYKCNRTGHFARECT 213
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 50.8 bits (116), Expect = 1e-07
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 250 RQREK-CFKCNRTGHFARDCXEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 411
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 412 GHIARNCPE 438
GH++ C +
Sbjct: 133 GHLSGQCEQ 141
Score = 46.4 bits (105), Expect = 2e-06
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXEEAD----RCYRC 336
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDNV-----SICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 337 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRE 450
+ GH++ +C Q+P P C C+ H+A++C + ++
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKD 172
Score = 37.1 bits (82), Expect = 0.001
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXE-------EAD 321
S+C++C H C++ G + + KCF C+ GH + C + +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 322 RCYRCNGTGHIARECAQ 372
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.15
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 139 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXE 312
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 28.7 bits (61), Expect = 0.45
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 358 RECAQSPDEPSCYNCNKTGHIARNCPE 438
R Q + C+ C + GHI ++CPE
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE 94
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +1
Query: 265 CFKCNRTGHFARDCXEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPE 438
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE 142
Score = 38.7 bits (86), Expect = 4e-04
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Frame = +1
Query: 160 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCXEEAD 321
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 322 R----CYRCNGTGHIAREC 366
R C C+ H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +1
Query: 253 QREKCFKCNRTGHFARDCXEEADR-----CYRCNGTGHIARECAQSPDEP 387
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.5 bits (78), Expect = 0.004
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 310 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 435
+E C C GH +C + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 306
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
Score = 25.0 bits (52), Expect = 5.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPE 438
C NC GH +CPE
Sbjct: 311 CQNCGNVGHRRFDCPE 326
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.45
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 145 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 300
P A +V K N GH E G V +S + K + +R G F+R
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSR 435
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 163 SVCYKCNRTGHFAREC 210
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 289 HFARDCXEEADRCYRCNGTGHIAREC 366
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 163 SVCYKCNRTGHFAREC 210
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 289 HFARDCXEEADRCYRCNGTGHIAREC 366
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 265 CFKCNRTGHFARDCXEEADRCY----RCNGTGHIARECAQSPDEPS 390
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +1
Query: 358 RECAQSPDEPS-----CYNCNKTGHIARNCP 435
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 4.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 166 VCYKCNRTGHFAREC 210
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 247 NRQREKCFKCNRTGHFARDCXEEA 318
+RQ KC +C RT + +++C +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 370 QSPDEPSCYNCNKTGHIARN--CPEGGR 447
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 108 LH*CLKCSRIFKTDRN 155
LH C+ C IF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 208 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 68
+R+R S KR + L+ V LEHL+H + ++N + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.2 bits (50), Expect = 9.7
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = -2
Query: 175 CSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQISCNL*RFYSKEASHHHYXN 11
C KR V + H H C++R P L++SC R K Y N
Sbjct: 731 CGKRRMYCEHVCQSPCHAGHPCDERIPCKAP--LEVSCECGRIRKKVTCDASYDN 783
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 257 VRSASSATAQDTLRGIAXKRLTVA 328
VRSA S+ Q T R +A +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = -2
Query: 436 RDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLXCNPSQSVLC 281
+DSS PSCCS + S + + + CS + C+ + C
Sbjct: 229 KDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCC 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,483
Number of Sequences: 5004
Number of extensions: 28692
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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