Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_P06
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 28 0.97
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 27 2.2
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.2
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 27 3.0
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa... 26 3.9
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 6.8
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 6.8
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 25 6.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 6.8
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 25 6.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 9.0
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 372 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSXIGSLDNATYKPG 506
P++P P+EK + + ++ KA +S + +D ATYKPG
Sbjct: 156 PQVPVPSEKNQKVLRQIAD--------KAFESNMHIIDMATYKPG 192
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 338 SIIEQECNSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSREI 466
SII + C + + +P K+ + + EC +K KS+EI
Sbjct: 61 SIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEI 103
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 368 NSRNSYPDRKEKSTDE*SSSWECTVAKFKSR 460
+ RN Y D+K S+ E +SS+E +A++ S+
Sbjct: 39 SERNGYGDKKGSSSKEKTSSFEDELAEYASQ 69
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 248 EIISLC-RFVNSAVVISLCVMFFHVLLDSNSVVDFGHF 138
EI+ L + N ++++ CV FH+ ++ +D HF
Sbjct: 207 EILELIEKSKNPSILVDACVSRFHIQQETQDFIDATHF 244
>SPAC31G5.18c |||ubiquitin family, human C1ORF55
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 316 TVLGRAFLDHRARVQQPKLQ 375
TVL RA+L H++R+ P +Q
Sbjct: 41 TVLERAYLTHQSRIVHPDIQ 60
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 171 EKHVEKHNTXGDNDSGVDESTQGNDLNGSPXSPNKKIVNKTP 296
+KH E GD+DS + +G DL +P K +K+P
Sbjct: 275 KKHHEDEGYDGDSDSSNESEVEGIDLFEEDPNPLKN-KSKSP 315
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 378 FLEFWLLHSCSMIEKGSP*DCYSIFLLLAFC 286
F E+ +H+C ++K S + S+FLL FC
Sbjct: 186 FFEWKTIHACPTVKKDSTLNPVSVFLL--FC 214
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 148 KSTTELLSRSTWKNITXREITTAELTNLHKEMISMD 255
K +T S W+++ R T + + KE+ SMD
Sbjct: 107 KGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVRSMD 142
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 266 SEQENRKQNANKRKIE*QS*GEPFSIIEQECNSQNSRNSYPDRKEKSTDE*SSS 427
S++ +KQ +K+K E S E S + +S + S E S+ E SSS
Sbjct: 67 SKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSS 120
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 156 DGVAVEKHVEKHNTXGDNDSGVDESTQGNDL 248
+ V VE ++ NT +N + VD++ G D+
Sbjct: 35 NSVDVEDQIKAFNTLRENAADVDDTVAGKDI 65
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +3
Query: 129 VHLKMAEVNDGVA--VEKHVEKHNTXGDNDSGVDESTQGNDLNGS--PXSPNKKI 281
V +M E D +E E G+ D+G+DE Q ND S P P KI
Sbjct: 28 VDTEMGEFEDAYEDEIESEEEYIEADGEKDNGMDEEEQ-NDAQPSKIPWLPGGKI 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,269
Number of Sequences: 5004
Number of extensions: 47073
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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