Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P06
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109...    29   3.0  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    29   4.0  
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295...    28   5.3  
12_02_0890 + 24040981-24041125,24041264-24041317,24042675-240428...    28   7.0  
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766     28   7.0  
06_01_0720 + 5248714-5248967,5250600-5251086                           27   9.3  

>05_01_0162 -
           1095020-1095202,1096114-1096188,1096939-1097039,
           1097467-1097577,1097704-1097807,1098260-1098493,
           1098583-1099304
          Length = 509

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 180 VEKHNTXGDNDSGVDESTQGN-DLNGSPXSPNKKIVNKTP 296
           VEKH T   +DSG  ES+  N + +G+  +P ++  + TP
Sbjct: 13  VEKHETAARSDSGTSESSVLNGEASGAAIAPAEEGSSSTP 52


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 329 EPFSIIEQECNSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSREI 466
           +PF ++E +  S  +RN +PD  + S  +  ++W+   +K  S ++
Sbjct: 228 QPF-VLELQLKSSPARNLFPDTNKASCSDDENNWKAKYSKSHSFKV 272


>09_04_0381 +
           17128437-17128655,17129250-17129331,17129409-17129564,
           17129646-17130431,17130743-17131094,17131467-17131548,
           17131756-17131833,17132041-17132055
          Length = 589

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 359 NSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSR 460
           +S+NS N   D K+K+ +  SSSWE T AK  S+
Sbjct: 500 SSKNSTNVI-DVKKKTVESKSSSWELTEAKSISK 532


>12_02_0890 +
           24040981-24041125,24041264-24041317,24042675-24042872,
           24043367-24043635
          Length = 221

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 538 SFLFSILTLPPPGLYVALSRDPXLDFTAFKFGDGA 434
           SF +   + P   L V   RDP L+FTA   G+G+
Sbjct: 106 SFSYPAASTPISVLQVLRPRDPNLNFTAVLVGEGS 140


>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
          Length = 943

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 57   DSAVITVSARQSLIKY*ISGRTYKVHLKMAEVNDGVAVEKHVEKHNTXGDNDSGVDE--S 230
            ++ ++    +Q ++K+   G+   + +++  + +   +E  + KH    DN+S  DE   
Sbjct: 825  ETVIMKQQQQQVIVKH---GKEEALAMEVKTLENSKIIEDDISKHRDDDDNESSDDEEIE 881

Query: 231  TQGND 245
            +QG+D
Sbjct: 882  SQGDD 886


>06_01_0720 + 5248714-5248967,5250600-5251086
          Length = 246

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 372 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSXIGSLDNATYKP 503
           PE+P+P ++K +  + V    + S  L  V     S  N+T  P
Sbjct: 114 PEVPSPKKRKGLLPSSVDKNKSQSKELSPVDDATSSPTNSTSSP 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,168
Number of Sequences: 37544
Number of extensions: 309532
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)