Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P06
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              30   1.3  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  30   1.8  
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05)             28   7.2  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 28   7.2  
SB_34820| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 153 NDGVAVEKHVEKHNTXGDNDSGVDESTQGNDLNG 254
           +D V  + HV+  +   DND GVD+   G+D NG
Sbjct: 693 DDDVDDDDHVDNDDCHDDNDDGVDDDDDGHDDNG 726


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = -3

Query: 242  ISLCRFVNSAVVISLC-VMFFHVLLDSNSVVDFGHF*VNFICPS*NLVLDKAL-SCRH 75
            +SLCR+V+  + +SLC   + HV++ S S+  + H  V  +CP   +V+  +L  CR+
Sbjct: 1022 MSLCRYVHVVMSMSLCPCRYVHVVM-SMSLCRYVHV-VMSLCPCRYVVMSMSLCPCRY 1077


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 30/113 (26%), Positives = 39/113 (34%)
 Frame = +3

Query: 78  SARQSLIKY*ISGRTYKVHLKMAEVNDGVAVEKHVEKHNTXGDNDSGVDESTQGNDLNGS 257
           +  ++L K    G T  +   M  VND    E  VE     G N  G+D    G +  G 
Sbjct: 568 AVEKTLTKLSNPGFTQSMKTAMQSVNDFEEKET-VE----TGVNKRGLDRKQVGKESKGK 622

Query: 258 PXSPNKKIVNKTPTKEXXXXXXXXXXXXXXXXXXTAKTPEIPTPTEKKKVPMN 416
                KKI  +    E                   AKT   P  T KKK P++
Sbjct: 623 EVQ-KKKITKQDNDHEVGGTVDIGGDSAKILNTRIAKTKREPKQTRKKKTPVS 674


>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +3

Query: 375 EIPTPTEKKKVPMNKVQVGNAPSPNLK--AVKSXIGSLD-NATYKPGGGKVKIENRKLEF 545
           ++PT   KK  P +  +    P P  K   V+  I ++D +A   P   K K+E    E 
Sbjct: 786 KVPTAAAKKAAPASPAKAKPTPKPKAKLTVVQGDIAAIDADAVVLPTNAKFKLEG---EV 842

Query: 546 GNITPKIAAK 575
           G    K   K
Sbjct: 843 GEALKKAGGK 852


>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 201 GDNDSGVDESTQGNDLNGSPXSPNKKIVNKTPTKE 305
           G+ +SG DE T+G+   G+   P +   + TP KE
Sbjct: 280 GEEESGEDEDTEGD--GGTSSGPRRGSSSTTPKKE 312


>SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05)
          Length = 493

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 104 VLDKALSCRHCYHCTILHFAARGT 33
           +L++  + +HC HC+ +H  A GT
Sbjct: 367 ILNEVDASQHCQHCSCVHDEANGT 390


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 210 DSGVDESTQGNDLNGSPXSPNKKIVNKTPTKE 305
           DS  D+ + G D       P KK+  KTPTK+
Sbjct: 117 DSSSDDDSSGED---EDEKPKKKVEKKTPTKQ 145


>SB_34820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 153 NDGVAVEKHVEKHNTXGDNDSGVDESTQGNDLNG 254
           NDG  V+   + ++  GD D   DE    +D++G
Sbjct: 50  NDGDGVDNDNDDNDCGGDGDDDEDEGVDDDDVDG 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,483
Number of Sequences: 59808
Number of extensions: 361386
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)