Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P03
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   3.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.5  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 528 GGSGGTTRRPDYQRSNARTASSCQRPPRNTCLYLSLKAKLSAWVGKYLMTLAKLPRQNER 349
           GG G   R+P    S+ +     +R  R   L L  +A+L+A +G    T  K+  QN R
Sbjct: 115 GGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG-LTQTQVKIWFQNRR 173


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 62  FRDPPSAXCRNSHLDIFT 115
           FRDP +    N+ L++FT
Sbjct: 320 FRDPNTGFMTNTPLEVFT 337


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 62  FRDPPSAXCRNSHLDIFT 115
           FRDP +    N+ L++FT
Sbjct: 320 FRDPNTGFMTNTPLEVFT 337


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 512  VPPEPPLCASCTPL 553
            VP +PP  A+CT L
Sbjct: 1099 VPEQPPDKATCTTL 1112


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 445 PRRALTRRRSSGVTSLVIWPPGGAAGATS 531
           P+ A T   SSG+TS    PP     + S
Sbjct: 15  PQSAATPISSSGMTSPAAAPPPATTSSGS 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,852
Number of Sequences: 336
Number of extensions: 2402
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)