Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P02
         (560 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O00231 Cluster: 26S proteasome non-ATPase regulatory su...    54   2e-06
UniRef50_Q4SWI1 Cluster: Chromosome 2 SCAF13618, whole genome sh...    53   4e-06
UniRef50_O81694 Cluster: 19S proteosome subunit 9; n=13; Viridip...    38   0.21 
UniRef50_Q4FZ08 Cluster: Proteasome regulatory non-ATPase subuni...    37   0.37 
UniRef50_A4SMX9 Cluster: Putative uncharacterized protein; n=1; ...    36   0.85 
UniRef50_Q4WRB4 Cluster: ABC multidrug transporter, putative; n=...    33   4.6  
UniRef50_Q22S68 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_A7RNN5 Cluster: Predicted protein; n=1; Nematostella ve...    33   6.0  

>UniRef50_O00231 Cluster: 26S proteasome non-ATPase regulatory
           subunit 11; n=53; Eukaryota|Rep: 26S proteasome
           non-ATPase regulatory subunit 11 - Homo sapiens (Human)
          Length = 422

 Score = 54.0 bits (124), Expect = 2e-06
 Identities = 31/91 (34%), Positives = 48/91 (52%)
 Frame = +2

Query: 251 AGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGILNXXXXXXXXXX 430
           A  + F+R++   ST+R+  + +   +V   ++ E+DE  ++ KEQ IL           
Sbjct: 4   AAVVEFQRAQSLLSTDREASIDILHSIVKR-DIQENDEEAVQVKEQSILELGSLLAKTGQ 62

Query: 431 XXXXXXXXXXTRPFLSLISKAKAAKLVRSLV 523
                      RPFL+ ISKAKAA+LVRSL+
Sbjct: 63  AAELGGLLKYVRPFLNSISKAKAARLVRSLL 93


>UniRef50_Q4SWI1 Cluster: Chromosome 2 SCAF13618, whole genome
           shotgun sequence; n=4; Tetraodontidae|Rep: Chromosome 2
           SCAF13618, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 484

 Score = 53.2 bits (122), Expect = 4e-06
 Identities = 32/91 (35%), Positives = 47/91 (51%)
 Frame = +2

Query: 251 AGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGILNXXXXXXXXXX 430
           A  + F+R++   ST+R+  + +   +V   ++ E+DE  +R KEQ IL           
Sbjct: 4   AAVVEFQRAQSLISTDRNASIDILHSIVRR-DVQENDEEAVRVKEQSILELGTLLAKTGQ 62

Query: 431 XXXXXXXXXXTRPFLSLISKAKAAKLVRSLV 523
                      RPFL  ISKAKAA+LVRSL+
Sbjct: 63  AAELGGLLKFVRPFLISISKAKAARLVRSLL 93


>UniRef50_O81694 Cluster: 19S proteosome subunit 9; n=13;
           Viridiplantae|Rep: 19S proteosome subunit 9 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 421

 Score = 37.5 bits (83), Expect = 0.21
 Identities = 22/60 (36%), Positives = 25/60 (41%)
 Frame = +2

Query: 344 ELPEDDEXNIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLV 523
           E P      IR KEQ I N                     RPF SLI KAK AK+VR ++
Sbjct: 31  EDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLRKLLTKLRPFFSLIPKAKTAKIVRRII 90


>UniRef50_Q4FZ08 Cluster: Proteasome regulatory non-ATPase subunit
           6, putative; n=5; Trypanosomatidae|Rep: Proteasome
           regulatory non-ATPase subunit 6, putative - Leishmania
           major
          Length = 527

 Score = 36.7 bits (81), Expect = 0.37
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 332 VSTGELPEDDEXNIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLV 511
           + T ++  DD   IRAKEQ +                       RPF  ++ KAK  K+V
Sbjct: 35  IVTTDVAVDDGDAIRAKEQAVYRLAELLTVTKDGEAAIQLLSDVRPFFQVLPKAKTTKMV 94

Query: 512 RSL 520
           R L
Sbjct: 95  RKL 97


>UniRef50_A4SMX9 Cluster: Putative uncharacterized protein; n=1;
           Aeromonas salmonicida subsp. salmonicida A449|Rep:
           Putative uncharacterized protein - Aeromonas salmonicida
           (strain A449)
          Length = 221

 Score = 35.5 bits (78), Expect = 0.85
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 330 WSALASCPKMMXKT*EQRSRVSLTSARNTKRK--GRLRSWQNLSKPPDHF*AS 482
           W+AL S P++      +R+ +SLTS     R+  G+L+ WQ     PDH  AS
Sbjct: 18  WNALVSTPELRRVLTPRRTPLSLTSTLLETRQALGQLQRWQEAVASPDHVTAS 70


>UniRef50_Q4WRB4 Cluster: ABC multidrug transporter, putative; n=6;
            Trichocomaceae|Rep: ABC multidrug transporter, putative -
            Aspergillus fumigatus (Sartorya fumigata)
          Length = 1600

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 514  TYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTLLL 380
            T QF  FS TY    W+  ++K+    SL +L V+ A +   LLL
Sbjct: 1009 TVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLL 1053


>UniRef50_Q22S68 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1490

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -2

Query: 559  IPIPASKXRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEV-KDTLL 383
            + I  SK R + NKGTYQ     ++++  + S  F   C+ LS  +++V   ++ K+ L 
Sbjct: 901  LAIIKSKFRYEENKGTYQILRNDYSFKQDQESQCFK--CKELSQEYIYVSKEKIAKEQLT 958

Query: 382  LC 377
            LC
Sbjct: 959  LC 960


>UniRef50_A7RNN5 Cluster: Predicted protein; n=1; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 1945

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = -2

Query: 487  TYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTLLLCSYVXFIIFGQLASADHFVSHAD 311
            T    K S G + +C+L  LPF   FLA V  T++L + V F I     S     S AD
Sbjct: 1520 TIAVDKESYGGEHYCRLKDLPFFVAFLAPVV-TIVLVNTVIFTIIMYKLSTRPLPSSAD 1577


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,363,335
Number of Sequences: 1657284
Number of extensions: 10010913
Number of successful extensions: 20024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20022
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)