Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P02
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    29   0.35 
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   1.4  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   1.9  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   3.3  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   3.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   4.4  
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.6  

>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 359 DEXNIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLV 523
           DE     +EQ + N                    +RP ++  SKAK+AK+VR+L+
Sbjct: 37  DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLI 91


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 375  LMFXXXXXXXSPVLTILSVMRTSSSLFVDDETRDL 271
            L+F        P LTI +++ T S    DDE R++
Sbjct: 1038 LVFGSIFGYLEPALTITAILSTKSPFLGDDEAREI 1072


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 342 PVLTILSVMRTSSSLFVDDETRD 274
           P+ T+L   RT + LF+DD TR+
Sbjct: 172 PMPTLLPYERTVNGLFIDDTTRE 194


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 90  ALATLSALYKLFLKRSSMTLRITTKLQRKVFRCNTI 197
           ALA  + L KL   R      +T KL   VFRCN +
Sbjct: 694 ALAEKADLLKLSENRKEQCKILTQKLYTIVFRCNEL 729


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 171 FVILL*FAKSSTTFSETICRARIKLPAHL 85
           F  LL F  S+   S+ ICR  +++ +HL
Sbjct: 692 FTSLLSFLSSNIVLSQAICRRIVEIQSHL 720


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 192 TILLFIEYFYSVSV*IYTVWPER 260
           +I L+I+Y YS +V  YT W ++
Sbjct: 310 SIRLWIDYLYSTAVDFYTNWIQK 332


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 208 INSKIVLQRNTFLCNFVVIRKVI 140
           +N+K++L  NTFL N + +  +I
Sbjct: 22  VNTKLILPHNTFLTNILFLLGLI 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,986
Number of Sequences: 5004
Number of extensions: 42529
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)