Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_P02
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28566| Best HMM Match : PCI (HMM E-Value=1.8) 52 2e-07
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 31 0.64
SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4) 30 1.1
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 29 2.6
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21) 29 3.4
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38) 29 3.4
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_27829| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 27 7.9
SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_28566| Best HMM Match : PCI (HMM E-Value=1.8)
Length = 344
Score = 52.4 bits (120), Expect = 2e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Frame = +2
Query: 269 ERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGILNXXXXXXXXXXXXXXXX 448
ER+ S++ DE + + +V PED+E I++KEQ IL
Sbjct: 6 ERALEIQSSSPDEAIGLLHAIVKRDVGPEDEE-GIKSKEQSILALASLLSRKGEAEELGG 64
Query: 449 XXXXTRPFLSLISKAKAAKLVRSLV 523
RPFL ++SKAKAAKLVR+LV
Sbjct: 65 LIKFIRPFLQMVSKAKAAKLVRTLV 89
>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = -2
Query: 487 TYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTLLLCSYVXFIIFGQLASADHFVSHAD 311
T K S G + +C+L LPF FLA V T++L + V F I S S AD
Sbjct: 1014 TIAVDKESYGGEHYCRLKDLPFFVAFLAPVV-TIVLVNTVIFTIIMYKLSTRPLPSSAD 1071
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 275 SRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGI 394
S V ++T+RD+DV + ST P D+E +I AKE I
Sbjct: 218 SLVYANTSRDDDVGEHETSRSTNTNPGDEELSILAKENEI 257
>SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
Length = 478
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 532 KKSNKGTYQFRSFSFTYEAQKWSGGFDKFC 443
K ++ Q SF+F+ +AQ+W GG D FC
Sbjct: 128 KAASINPQQTHSFTFSVKAQQWKGG-DNFC 156
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 278 RVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGI 394
+ S D+DV M DK+ E DD N AK+ I
Sbjct: 65 KFEDSDESDDDVPMADKLTEDMEQNTDDNSNTVAKDSSI 103
>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1910
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 320 SCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTIKV 213
S +L C + L PYC Y YAYT K+
Sbjct: 1629 SATQLAACCDAAAVPALHLGGLFPYCAYTYAYTYKM 1664
>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
Length = 1080
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 380 LLLCFXHHLRAARQC*PFCQSCGRLRLC 297
LL C HH R + P C CGR R+C
Sbjct: 433 LLRCAMHHGRTHVRDPPSCIKCGRPRVC 460
>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
Length = 1172
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 380 LLLCFXHHLRAARQC*PFCQSCGRLRLC 297
LL C HH R + P C CGR R+C
Sbjct: 432 LLRCAMHHGRTHVRDPPSCIKCGRPRVC 459
>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 320 SCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTIKV 213
S +L C + L PYC Y Y YT K+
Sbjct: 383 SATQLAACCDAAAVPALHLGGLFPYCAYTYTYTYKI 418
>SB_27829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -2
Query: 550 PASKXRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLF-VFLAEVKDT 389
P + KS + F + Q+W DK C L PF + VFL +V D+
Sbjct: 52 PMLRKVTKSGRKDAVVAFFKRHFRGQEWENWIDK-CSRLLFPFFYGVFLLKVDDS 105
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 320 SCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTIKV 213
S +L C ++ L PYC Y +AYT K+
Sbjct: 986 SATQLAACCDAAAVQALRLGGLFPYCAYTHAYTYKM 1021
>SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 320 SCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTIKV 213
S +L C + L PYC Y YAY+ K+
Sbjct: 365 SATQLAACCDAASVPALHLGGLFPYCAYTYAYSYKM 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,330
Number of Sequences: 59808
Number of extensions: 319182
Number of successful extensions: 667
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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