Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P02
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    38   0.007
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    38   0.007
Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81057-1|CAB02914.2|  460|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   9.2  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    27   9.2  
U23517-5|AAB93339.2|  425|Caenorhabditis elegans Serpentine rece...    27   9.2  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    27   9.2  

>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 27/92 (29%), Positives = 37/92 (40%)
 Frame = +2

Query: 248 MAGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGILNXXXXXXXXX 427
           M+G  + +        N    +R    +V +    +DD   I+ KE  I+          
Sbjct: 1   MSGGTIMDTMTSLPHQNDQNVIRHLTNLVKSPASGDDD---IKKKEDSIMELGNILAQNK 57

Query: 428 XXXXXXXXXXXTRPFLSLISKAKAAKLVRSLV 523
                      TRPFL  + KAKAAKLVR LV
Sbjct: 58  QTEELRNMIEQTRPFLVSLGKAKAAKLVRDLV 89


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 27/92 (29%), Positives = 37/92 (40%)
 Frame = +2

Query: 248 MAGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGILNXXXXXXXXX 427
           M+G  + +        N    +R    +V +    +DD   I+ KE  I+          
Sbjct: 19  MSGGTIMDTMTSLPHQNDQNVIRHLTNLVKSPASGDDD---IKKKEDSIMELGNILAQNK 75

Query: 428 XXXXXXXXXXXTRPFLSLISKAKAAKLVRSLV 523
                      TRPFL  + KAKAAKLVR LV
Sbjct: 76  QTEELRNMIEQTRPFLVSLGKAKAAKLVRDLV 107


>Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical
           protein R05A10.7 protein.
          Length = 304

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
 Frame = -2

Query: 529 KSNKGTYQFRSFSFTYEAQKWSGGFDKF-CQLLSLPFLFVFLAEVKDTLLLCSYVXF--- 362
           KSN+ +  +  F +T + Q  S    KF C LL        L E K+   L + +     
Sbjct: 3   KSNRSSISY-DFCYT-DPQNTSIIGKKFDCSLLDTLENLNLLGETKEVFSLSNLIQNEND 60

Query: 361 IIFGQLASADHFVSHADVFVSVRR**DA*SFK*HRSGHTVYIYTLTL*KYSINS 200
           +IF    S DHF    D F S+R+         +   HT  +Y L L +Y INS
Sbjct: 61  LIFASATSDDHFNFSMDSFHSIRK---------YYPNHTYILYGLGLSEYYINS 105


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +3

Query: 252 PERCYLKDHASHHRRTETKTSA*LTKWSALASCPKMMXKT*EQRSRV 392
           P R YL   ASH  R   +  A L  W   A+CP +   T E+R  V
Sbjct: 766 PGRHYLC--ASHFNRNSLRYHAGLGLWRRAAACPVLACTTDEERQEV 810


>Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical
           protein F15H10.10 protein.
          Length = 262

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 323 QSCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTIKVFDK*QDCITTE 180
           + CG +    S  RR   Q++    YC++ YA   K+ +  + C   +
Sbjct: 39  EECGHIYKSCSKRRRRNSQVSRTSKYCLFFYADRDKILNTEKQCFDVQ 86


>Z81057-1|CAB02914.2|  460|Caenorhabditis elegans Hypothetical
           protein F10D11.2 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/81 (18%), Positives = 37/81 (45%)
 Frame = +2

Query: 122 VSEKVVDDFANYNKITKKSVPL*YNLAIYRILL*CKRINIHSMAGAMLFERSRVSSSTNR 301
           + EK+ +D    N++T    P+   + +Y + +  +  N+HS          ++ ++ N 
Sbjct: 146 IEEKIENDTFGQNEVTVNQQPINNPMPVYPVPISHEPANLHSPIRNRSISPEKMDTTGNS 205

Query: 302 DEDVRMTDKMVSTGELPEDDE 364
              + + D + +T  + + DE
Sbjct: 206 GAGMSVRDFLKNTMTVQKADE 226


>Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A5.2 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 305 EDVRMTDKMVSTGELPEDDEXNIRAKEQGI 394
           EDVRM + +    E+  DD  NI+ K Q +
Sbjct: 214 EDVRMEETIAKIDEVRIDDNKNIQEKSQRV 243


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 544 SKXRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTL 386
           S  +KKSNKG   +R    T+  ++  GG  K   L +L    +   E   TL
Sbjct: 286 STKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTL 338


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 544 SKXRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTL 386
           S  +KKSNKG   +R    T+  ++  GG  K   L +L    +   E   TL
Sbjct: 286 STKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTL 338


>U23517-5|AAB93339.2|  425|Caenorhabditis elegans Serpentine
           receptor, class o (opsin)protein 1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/79 (21%), Positives = 35/79 (44%)
 Frame = +3

Query: 57  YSCIKY*LQISALATLSALYKLFLKRSSMTLRITTKLQRKVFRCNTILLFIEYFYSVSV* 236
           + C+ Y      L+ +  L    +      + IT K  +  +RCN+    + +F +++V 
Sbjct: 124 WGCVVYGAADMTLSLIEVLLACMIAFDRYIVTITPKWGK--WRCNSNYFKLIFFGAIAVG 181

Query: 237 IYTVWPERCYLKDHASHHR 293
           +++  P   Y K    HH+
Sbjct: 182 LWSFVPTAGYGKYSTFHHK 200


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 544 SKXRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTL 386
           S  +KKSNKG   +R    T+  ++  GG  K   L +L    +   E   TL
Sbjct: 286 STKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTL 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,019
Number of Sequences: 27780
Number of extensions: 249661
Number of successful extensions: 508
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)