Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P02
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/62 (17%), Positives = 28/62 (45%)
 Frame = +2

Query: 98  NFIRALQIVSEKVVDDFANYNKITKKSVPL*YNLAIYRILL*CKRINIHSMAGAMLFERS 277
           N + ++  V +   +  A    +  ++ P+ YNL + ++    KR+   S     +F+ +
Sbjct: 182 NILESISYVKDDGTEGIAKSGDVLVETEPIYYNLTMVKLNWPKKRVTKMSSINPCIFDNA 241

Query: 278 RV 283
            +
Sbjct: 242 TI 243


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 359 HLRAARQC*PF-CQSCGRLRLCSSMMRRVIFQITSLRPY 246
           H+R      P+ C++CG+   CS  ++      T  +PY
Sbjct: 194 HMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPY 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,920
Number of Sequences: 438
Number of extensions: 2899
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)