Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_P01
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 92 3e-20
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 78 4e-16
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 54 7e-09
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.23
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 27 0.70
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 1.6
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 26 2.1
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 2.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 2.8
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 25 4.9
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 4.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 4.9
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 24 6.5
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 6.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 8.6
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 24 8.6
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 91.9 bits (218), Expect = 3e-20
Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +1
Query: 34 VTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFS 213
V KYK+AG++ V+++V+ C P A +IC GD+L+ E KV+ + KD+ KGIAF
Sbjct: 22 VNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVY-RTKDAYKGIAFP 80
Query: 214 TCVSVNNCICHFSPIASEPD--YILKKGDLXKIDLGAHIAG 330
T VS N+ H SP+ S+P+ LK GD+ KI LGAHI G
Sbjct: 81 TAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDG 121
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 78.2 bits (184), Expect = 4e-16
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Frame = +1
Query: 37 TKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFST 216
+KY+ AG +V++ QV ++CVP AS REI +GD L+ E + ++K ++ +KGIA T
Sbjct: 19 SKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKSQR-FEKGIAEPT 77
Query: 217 CVSVNNCICHFSP------IASEPDYILKKGDLXKIDLGAHIAG 330
+ VNNC +++P ++ Y L+ GD+ KI +G H G
Sbjct: 78 SICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDG 121
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 54.0 bits (124), Expect = 7e-09
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 151 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLXKIDLGAHIAG 330
+E T + +E K GI F T VS+N+C H++P A + ILK+ D+ K+D+G H+ G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 29.1 bits (62), Expect = 0.23
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -1
Query: 295 NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 206
+L+ S+C V+ QW+ ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 0.70
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 211 STCVSVNNCICHFSPIASEPDYILKKGDLXKIDLGAHIAG 330
S C SVN ICH P P L+ GD+ ID+ + G
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNG 216
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 98 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 193
AF T +Q Y N NLY+ ++ S R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +1
Query: 10 KRLQKDLVVTKYKLAGQIVNRVLEQVIAKCVPD 108
K+++++L V + AG++++++ E KC+P+
Sbjct: 23 KQIRQELAVAQ---AGELISKINENCFDKCIPE 52
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 147 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 43
K + KF+ C +++A C+D L S H C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 109 ASAREICEFGDKLVLEETNKVFKKEKD 189
++ +E FG+KL E T K+ EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 4.9
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 236 QLFTETHVENAMPF--LESFSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFT 63
++F + A+PF + SF+ + +S +S+ + AS F C +T+F
Sbjct: 351 KIFQKYESSEAVPFCIILCGSFMSSAFHNSGSSIQYKEGFNKLAASLEKFPKICEKTKFI 410
Query: 62 ICP 54
P
Sbjct: 411 FVP 413
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 125 ISLADASGTHFAMTCSRTRFTICPANLYLVT 33
+SL + G+ FA+ C R + +C A L++
Sbjct: 725 LSLLNDDGSSFALKCIRIKHYMCWAGAQLIS 755
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.6 bits (51), Expect = 4.9
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 46 KLAGQIVNRVLEQVIAKCVPDASAREICE----FGDKLVLEETNKVFKKEKDSKKGIAFS 213
+ A +VN + EQV + V S + E DKL L++ V D+ +AF
Sbjct: 537 EFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPVSASDASSNLAFL 596
Query: 214 TCVSVN 231
T +S N
Sbjct: 597 TNMSSN 602
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 7 KKRLQKDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREI 126
K R+QKD+ ++ LA ++V V E++ + + D + + I
Sbjct: 102 KLRMQKDVNRKRFPLADRVVELVDEKLTGEVLLDEAIKMI 141
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 233 LFTETHVENAMPFLESFSFLKTLLVSSNTS 144
L+ T +EN F+E + TL+ SSN +
Sbjct: 678 LYLSTFLENNKSFIEGLNSPNTLIGSSNVA 707
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 127 CEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIAS 264
C++ ++ TN+V E S+ G F ++ I H + +AS
Sbjct: 1602 CDYNFSVIASSTNEVTISELTSESGCLFFHFEKDDSGIDHVTAVAS 1647
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 130 EFGDKLVLEETNKVFKKEKDSKKG 201
E GD V E NK +K+K+ KKG
Sbjct: 203 ETGDATVEELQNKGKEKQKELKKG 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,713
Number of Sequences: 5004
Number of extensions: 29152
Number of successful extensions: 112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -