Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O23
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   151   3e-37
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    27   5.6  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     27   9.8  
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     27   9.8  
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529...    27   9.8  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  151 bits (366), Expect = 3e-37
 Identities = 68/110 (61%), Positives = 87/110 (79%)
 Frame = +3

Query: 51  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVRDINDASVYP 230
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIV  AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 231 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRRIRTPPKSNFPRDMSRPQ 380
            + LPKLYAK+H+CVSCAIH+ +VR RS ++RR R PP+  F R +  P+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>09_04_0042 -
           14055885-14056142,14057508-14057774,14057859-14059292,
           14059378-14059539,14059642-14059768,14059869-14060200,
           14060289-14061083,14061379-14061714,14061791-14062730,
           14063338-14063588
          Length = 1633

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 206 ISDRRRXYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSNLRS 33
           +S+ R      NH   D+    H P A+C  HS ++  + LG+  +T      ++L+S
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 54  TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVXAAAVR 203
           T  RR    A  G G   AV C +CA   P + A+   +   +  A   R
Sbjct: 78  TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 9   FSXRSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCAR 134
           F  RSLF       +T+ R+NG    HG+G     R  +  R
Sbjct: 509 FVWRSLFPNDLAIAITKDRQNGAFKPHGKGRKAGKRVYDIKR 550


>03_02_0054 +
           5292167-5292336,5292434-5292526,5292828-5293003,
           5293076-5293122,5293732-5293801,5293960-5294186,
           5294274-5294327,5294470-5294545,5294679-5294884
          Length = 372

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = -3

Query: 95  TSMLGASSITALTSHVSNLRSGEQ 24
           +SML  +S+++++S +SNLRS +Q
Sbjct: 164 SSMLRRASVSSISSFLSNLRSHDQ 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,362
Number of Sequences: 37544
Number of extensions: 203489
Number of successful extensions: 521
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)