Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_O21
(651 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 48 1e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 47 2e-05
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 36 0.048
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 36 0.048
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 36 0.063
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 36 0.063
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 36 0.063
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 36 0.063
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 34 0.19
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 33 0.34
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 32 0.78
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 31 1.4
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 31 1.8
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 31 1.8
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 30 3.1
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 29 7.2
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/76 (35%), Positives = 38/76 (50%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAS 265
N H +G TT+ G +D +L LLN SPT + N + +DL++C+P LA
Sbjct: 133 NGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTY-THIDLTLCSPILAP 191
Query: 264 XHSWYTSSXTFGSDHF 217
W + GSDHF
Sbjct: 192 HAKWKILNDLHGSDHF 207
Score = 29.5 bits (63), Expect = 4.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 93 ASYRPIALSSVLTKVAEHLVKNRLEW 16
+SYRPI+L+ + K+ + ++ RL W
Sbjct: 506 SSYRPISLNCCIAKILDKIIAKRLWW 531
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAS 265
N ++G T+T G + ++ +L +LN GSPT + N + +D+S+ +P +A
Sbjct: 137 NSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHNTF-THIDISLISPQIAH 195
Query: 264 XHSWYTSSXTFGSDHF 217
SW S GSDHF
Sbjct: 196 MCSWSISDNLHGSDHF 211
Score = 36.3 bits (80), Expect = 0.036
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 102 NDVASYRPIALSSVLTKVAEHLVKNRLEWF 13
+D+ SYRPI+L S L K E ++ RL WF
Sbjct: 508 SDINSYRPISLLSCLGKTLEKIIAQRLTWF 537
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 35.9 bits (79), Expect = 0.048
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 271
N H+ +GC G L + + ++ ++ TGS T K PSA+D SIC L
Sbjct: 167 NAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC-KRL 225
Query: 270 ASXHSWYTSSXTFGSDH 220
+SS SDH
Sbjct: 226 GRYEKRISSSAHLSSDH 242
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 102 NDVASYRPIALSSVLTKVAEHLVKNRL 22
N+ SYRPI+L S L+K+ E L+ RL
Sbjct: 565 NEPKSYRPISLLSGLSKMFERLLLKRL 591
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 35.9 bits (79), Expect = 0.048
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPSAVDLSICTPDLA 268
N H ++G G L E L + +L TGSPTR P+ PS +D ++ +
Sbjct: 140 NARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV-YHGIP 198
Query: 267 SXHSWYTSSXTFGSDH 220
+ T S SDH
Sbjct: 199 DHLATITQSWDLDSDH 214
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -1
Query: 90 SYRPIALSSVLTKVAEHLVKNRL 22
SYRPI+L S L+K+ E L+ NRL
Sbjct: 513 SYRPISLLSSLSKLWERLIANRL 535
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 35.5 bits (78), Expect = 0.063
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 271
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 39 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 97
Query: 270 ASXHSWYTSSXTFGSDH 220
+SS SDH
Sbjct: 98 GRLEKRISSSADLSSDH 114
Score = 31.9 bits (69), Expect = 0.78
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 105 INDVASYRPIALSSVLTKVAEHLVKNRL 22
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 436 VNDPKSYRPISLLSGLSKMFERLLLKRL 463
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.5 bits (78), Expect = 0.063
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 271
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 270 ASXHSWYTSSXTFGSDH 220
+SS SDH
Sbjct: 214 GRLEKRISSSADLSSDH 230
Score = 31.9 bits (69), Expect = 0.78
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 105 INDVASYRPIALSSVLTKVAEHLVKNRL 22
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 35.5 bits (78), Expect = 0.063
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 271
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 117 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 175
Query: 270 ASXHSWYTSSXTFGSDH 220
+SS SDH
Sbjct: 176 GRLEKRISSSADLSSDH 192
Score = 31.9 bits (69), Expect = 0.78
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 105 INDVASYRPIALSSVLTKVAEHLVKNRL 22
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 514 VNDPKSYRPISLLSGLSKMFERLLLKRL 541
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.5 bits (78), Expect = 0.063
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 271
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 270 ASXHSWYTSSXTFGSDH 220
+SS SDH
Sbjct: 214 GRLEKRISSSADLSSDH 230
Score = 31.9 bits (69), Expect = 0.78
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 105 INDVASYRPIALSSVLTKVAEHLVKNRL 22
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 33.9 bits (74), Expect = 0.19
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 271
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 270 ASXHSWYTSSXTFGSDH 220
+S SDH
Sbjct: 214 GRFEKRISSGADLSSDH 230
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 102 NDVASYRPIALSSVLTKVAEHLVKNRL 22
N+ SYRPI+L S L+K+ E L+ RL
Sbjct: 553 NEPRSYRPISLLSGLSKIFERLLLKRL 579
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.1 bits (72), Expect = 0.34
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 271
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 270 ASXHSWYTSSXTFGSDH 220
+S SDH
Sbjct: 214 GRLEKRISSVADLSSDH 230
Score = 31.9 bits (69), Expect = 0.78
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 105 INDVASYRPIALSSVLTKVAEHLVKNRL 22
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 31.9 bits (69), Expect = 0.78
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -1
Query: 99 DVASYRPIALSSVLTKVAEHLVKNRL 22
DV SYRPI+L L K+ E L+ NRL
Sbjct: 313 DVDSYRPISLLPSLGKIMERLILNRL 338
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -1
Query: 444 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKP-NEKPSAVDLSICTPDLA 268
N H ++G G ++ G+ L ++ + L TG PTR P +D ++ T +
Sbjct: 139 NASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFAL-TKGVL 197
Query: 267 SXHSWYTSSXTFGSDH 220
H+ ++ SDH
Sbjct: 198 GIHANISAVVELSSDH 213
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1
Query: 90 SYRPIALSSVLTKVAEHLVKNRLEWF 13
SYRPI+L S L+K+ E L+K RL F
Sbjct: 537 SYRPISLLSGLSKILEKLIKLRLVKF 562
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1
Query: 90 SYRPIALSSVLTKVAEHLVKNRLEWF 13
SYRPI+L S L+K+ E L+K RL F
Sbjct: 485 SYRPISLLSGLSKILEKLIKLRLVKF 510
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 99 DVASYRPIALSSVLTKVAEHLVKNRL 22
DV SYRP +L L K+ E L+ NRL
Sbjct: 511 DVDSYRPTSLLPSLGKIMERLILNRL 536
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 324 KPNEKPSAVDLSICTPDLASXHSWYTSSXT 235
K ++ P+ + LS C PDLA H+ +SS T
Sbjct: 1182 KISKPPNDLSLSTCIPDLAMGHTNLSSSTT 1211
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,005,937
Number of Sequences: 53049
Number of extensions: 368284
Number of successful extensions: 782
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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