Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O19
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   1.8  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    26   1.8  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   4.3  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   5.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   7.4  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    24   9.8  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    24   9.8  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   9.8  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 364 CSRYIEWTLHPRSWWQNTLXLHXXPQFMWWIRRVVFIKIW 245
           C ++ E+     S ++ +      PQFM+++RR  F++++
Sbjct: 548 CQKFAEYRKDDPSSFRLSSQFTLYPQFMYYLRRSPFLQVF 587


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 143 LPLMCNQQSRTTTTKHHNPKFKKERAQKFLKIXLPDF 253
           L ++ +    T   KHH   F+  RA K+++   P+F
Sbjct: 16  LQMVISDVDGTLLDKHHRFHFRTYRAMKYIREKYPNF 52


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 164 QSRTTTTKHHNPKFKKERAQKFLKIXLPDFNED 262
           Q  TTT  + N   K+ RAQ  + I   D N++
Sbjct: 19  QDATTTPDNANNVPKEPRAQSMISIAADDLNQE 51


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 242 LPDFNEDHTSYPPHKLRXXMKXKGVLPPRPWME 340
           L +  E H  YP HK+    +   + P +P ++
Sbjct: 89  LGEIQEFHKKYPDHKVEDLSQLYSIKPSQPGID 121


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 157  QSAISHNHNETS*PEV*KG 213
            Q+   H HN+ S PEV KG
Sbjct: 3568 QTLAGHQHNDLSVPEVQKG 3586


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 236 IXLPDFNEDHTSYPPHKLR 292
           + LP+F+ED T + P  +R
Sbjct: 94  VQLPNFDEDTTEFTPSTIR 112


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 311 GVLPPRPWMERPF 349
           G+L P  W ERPF
Sbjct: 222 GILTPNLWAERPF 234


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 152 MCNQQSRTTTTKHHNPKFKKERAQKFLKIXLPDFNEDHTSY 274
           + N+       KH     +KER      + + DFNE+ T Y
Sbjct: 630 LLNKAEMLKNPKHDIHHDEKERRTTVDNVSIIDFNEEDTVY 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,147
Number of Sequences: 5004
Number of extensions: 25555
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)