Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O19
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    29   1.0  
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670...    29   1.4  
08_02_0716 + 20364848-20364978,20365011-20365230                       26   9.6  
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    26   9.6  

>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 275 PPHKLRXXMKXKGVLPPRPWMERPFYISATGGVFEAYVPT 394
           PPH     +   G + P P    P + S   G+F A VP+
Sbjct: 483 PPHPAAAALSPPGAIAPAPASMLPPFNSTAAGIFAAPVPS 522


>03_06_0470 +
           34164873-34165856,34166335-34166568,34166680-34167006,
           34168426-34168716
          Length = 611

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 289 QFMWWIRRVVFIKIWKVYLKEFLSTFLFK 203
           QF+W I R +    +  +LK ++STF FK
Sbjct: 398 QFLWRIERQIGRPAFDEFLKNYISTFKFK 426


>08_02_0716 + 20364848-20364978,20365011-20365230
          Length = 116

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 301 EGXGCFATKTVDGASILYICYRWSL*SIC 387
           EG     ++ VD + + YIC++WS    C
Sbjct: 64  EGHLLTGSQPVDRSDLSYICFKWSSYDYC 92


>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
 Frame = -2

Query: 289 QFMWWIRRVVFIKIWKVYLKEFLSTFLFKLRVMMFR----CGCARLLIAHQWQ--GLTLR 128
           QF+  +R +VF  ++KV + +F        +V M R      C  +  +++ Q  G  + 
Sbjct: 568 QFLRILRNIVFSPLYKVVMVDFFMADQLCSQVPMLRSLEYVACYYISGSYRTQEYGYCIN 627

Query: 127 RKTLIVAELAISFL-YYFLNLYC 62
            K +     A+SFL YY+  + C
Sbjct: 628 TKHIRDLAYAVSFLPYYWRAMQC 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,085,521
Number of Sequences: 37544
Number of extensions: 174672
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)