Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O19
         (395 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal...    29   5.6  
BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal...    29   5.6  
AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens ...    29   5.6  

>BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 314 VLPPRPWMERPFYISATGGVFEAYVP 391
           V+PP    +R  +++ T G+F+AYVP
Sbjct: 66  VIPPEK-SDRSIHLACTAGIFDAYVP 90


>BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 314 VLPPRPWMERPFYISATGGVFEAYVP 391
           V+PP    +R  +++ T G+F+AYVP
Sbjct: 66  VIPPEK-SDRSIHLACTAGIFDAYVP 90


>AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23902 fis, clone ADKA01604. ).
          Length = 306

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 314 VLPPRPWMERPFYISATGGVFEAYVP 391
           V+PP    +R  +++ T G+F+AYVP
Sbjct: 66  VIPPEK-SDRSIHLACTAGIFDAYVP 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,078,564
Number of Sequences: 237096
Number of extensions: 956894
Number of successful extensions: 1510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)