Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O14
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   178   6e-46
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   178   6e-46
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   5.3  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   7.0  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  178 bits (433), Expect = 6e-46
 Identities = 78/107 (72%), Positives = 96/107 (89%)
 Frame = +3

Query: 123 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 302
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 303 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLE 443
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLD 107



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/72 (44%), Positives = 52/72 (72%)
 Frame = +1

Query: 400 KSRKISNTTATSPLKDVXGIAXIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLI 579
           K + ++++   S L ++  +A  MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ 
Sbjct: 94  KDKNVAHSGNVS-LDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQ 152

Query: 580 DDINSGALTIDE 615
            +I++G + I +
Sbjct: 153 KEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  178 bits (433), Expect = 6e-46
 Identities = 78/107 (72%), Positives = 96/107 (89%)
 Frame = +3

Query: 123 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 302
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 303 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLE 443
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLD 107



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/72 (44%), Positives = 52/72 (72%)
 Frame = +1

Query: 400 KSRKISNTTATSPLKDVXGIAXIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLI 579
           K + ++++   S L ++  +A  MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ 
Sbjct: 94  KDKNVAHSGNVS-LDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQ 152

Query: 580 DDINSGALTIDE 615
            +I++G + I +
Sbjct: 153 KEIDNGEIEIPQ 164


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 624 KHLFINGQSSAVDVINKIMWRPALHSTS 541
           K ++++ ++ A+D++NK M   A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 401 FTVTGRLLKGSDDKGCCR 348
           F VTG +L  S D GC R
Sbjct: 297 FNVTGTILSSSGDDGCVR 314


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 202 DDVAPTSPPTHRKFTILI 149
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,272
Number of Sequences: 5004
Number of extensions: 53335
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)