Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O14
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        171   5e-43
02_05_0416 + 28791512-28792012                                        171   5e-43
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    31   1.0  
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   2.4  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   7.2  
07_03_0313 + 16620817-16621515                                         27   9.5  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    27   9.5  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  171 bits (415), Expect = 5e-43
 Identities = 80/108 (74%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
 Frame = +3

Query: 123 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 299
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 300 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLE 443
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLD 108



 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = +1

Query: 439 LKDVXGIAXIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 609
           L DV  IA IMRNRSMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 107 LDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  171 bits (415), Expect = 5e-43
 Identities = 80/108 (74%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
 Frame = +3

Query: 123 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 299
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 300 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLE 443
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLD 108



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = +1

Query: 439 LKDVXGIAXIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 609
           L DV  IA +MR RSMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 107 LDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 602 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 510
           +APL   S+RSCG L   + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 279 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 407
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 120 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 248
           K+P + F  N +KIV ++C G EV         +G  G+  +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412


>07_03_0313 + 16620817-16621515
          Length = 232

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 286 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 149
           PF     +A++      D     +LGAK D+   S P H K  +L+
Sbjct: 15  PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 162 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 263
           N +C G E G  S  AP++ PLG+ PK  G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,456,438
Number of Sequences: 37544
Number of extensions: 391387
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)