Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_O11
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 34 0.010
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 32 0.053
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 4.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 4.6
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 6.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 6.1
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 25 8.0
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.0
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 34.3 bits (75), Expect = 0.010
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 223 WSNSFGKHFVCSNSWFHFIGSNVIRVVVFNFLSGVNVLVFDCPVVFTIN 77
W +F K F S SWFH + +N R+ V +F + VF+ P + N
Sbjct: 465 WKKAFYKTFYESRSWFHLV-TNFNRIWVIHFTTYWYYTVFNSPTIIEKN 512
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 31.9 bits (69), Expect = 0.053
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 223 WSNSFGKHFVCSNSWFHFIGSNVIRVVVFNFLSGVNVLVFDCPVVFT 83
W+ +F K + S SWFH I +N R+ V +F F+ P ++T
Sbjct: 495 WNRAFYKTYYESRSWFHLI-TNFNRIWVIHFGMFWYFTAFNSPTLYT 540
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 288 FSLAAKSISRLDGPPASSKS 229
FS+A K +S + GPP + K+
Sbjct: 220 FSIAVKELSLIHGPPGTGKT 239
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 223 WSNSFGKHFVCSNSWFHFIGSNVIRVVVFNFLSGVNVLVFDCPVVFTIN 77
W + F K + SWFH + +N R+ V + + ++ P ++T N
Sbjct: 316 WKSCFYKSYYEYRSWFHNV-TNFSRIWVMHISAYWYYSAYNSPNLYTKN 363
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 276 AKSISRLDGPPASSKSIYGPTPSGNISSAAIVG 178
A+SI+R + AS IY P+ ++S A+VG
Sbjct: 71 ARSITRPES--ASESKIYAPSARSSLSLEAVVG 101
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 56 TQNSDYLIYCEYYRAIKDKHINTRQKVKYYYSNYV*TYKMKPTIAADEM 202
+ SDYL R ++ K + Q+ Y Y+ +YK IAA ++
Sbjct: 1178 SSTSDYLSLNSILRVLQGKMVKWEQRFLDYQRLYLPSYKELSKIAAAQI 1226
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 51 VAHRIVIILFIVNTTGQSKTSTLTPDKKLNTTTRITFE 164
+A + II V+ T + +TL PD + + TRI++E
Sbjct: 259 IAMKDKIISATVDNTIEHVETTLDPDTEWHEPTRISYE 296
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 69 IILFIVNTTGQSKTSTLTPDKKLNTTTRITFEPIK 173
+++ NT+ + + L+PD + N TTR TF ++
Sbjct: 37 LVVSYTNTSCYT-SGPLSPDTRFNRTTRGTFSKVR 70
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 59 QNSDYLIYCEYYRAIKDKHINTRQKVKYYYSNYV*TYKMKPTIAADEMFPEGVGPY 226
+N D L+ EY I Q ++YYY + + T+ MF +G G Y
Sbjct: 399 ENWDQLVRFEYTNGIVTLDTIVNQLIRYYYRGF--RHLSGMTMGMRRMFTQG-GSY 451
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 59 QNSDYLIYCEYYRAIKDKHINTRQKVKYYYSNYV*TYKMKPTIAADEMFPEGVGPY 226
+N D L+ EY I Q ++YYY + + T+ MF +G G Y
Sbjct: 399 ENWDQLVRFEYTNGIVTLDTIVNQLIRYYYRGF--RHLSGMTMGMRRMFTQG-GSY 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,583
Number of Sequences: 5004
Number of extensions: 27929
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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