Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O09
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   5.4  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   7.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.4  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 364 FVRHIIYGPCLSKKHDPQLINSIVLIGIQ 278
           F +H IY    S +HDP+L++S+V + IQ
Sbjct: 148 FFKHRIYEA--STQHDPELLSSLVTMHIQ 174


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 171 CQKVIRF--FKYYNTEKAL*LNYFNPKW 248
           C K+I F    YY++E    + YF P W
Sbjct: 171 CDKIIAFPPGHYYDSETKQTVRYFKPSW 198


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 238 IRSGVNYHMPSIXTVSQS 291
           ++  +NYH+P I T SQS
Sbjct: 661 VQEWMNYHIPGICTTSQS 678


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 515 LHSPGTGYNVKGEIYEVDDKMLSNLDILEDHPNCYIXXKN 634
           LH    G  ++  ++ +  K+L  +  L  + NCY+  KN
Sbjct: 489 LHEVAVGTPLQQFVHNLSQKLLFLVFQLSTNTNCYLDSKN 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,846
Number of Sequences: 5004
Number of extensions: 53318
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)