Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O09
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0725 + 35759792-35760358                                         70   1e-12
11_01_0238 - 1835056-1835110,1835671-1835849,1835941-1836246           50   2e-06

>03_06_0725 + 35759792-35760358
          Length = 188

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +2

Query: 365 VFVYGTLKRNEPNHGTMTN-PENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYN 541
           VF YGTLKR   NHG + +   +G A+F+    T  + PL+    Y VPFLL+ PG G+ 
Sbjct: 28  VFTYGTLKRGFSNHGLLQDLARDGDASFVGAATTAPRLPLVCGP-YRVPFLLNLPGAGHR 86

Query: 542 VKGEIYEVDDKMLSNLDILE 601
           V GE+Y V  + L  LD LE
Sbjct: 87  VSGELYAVTPRGLDRLDELE 106


>11_01_0238 - 1835056-1835110,1835671-1835849,1835941-1836246
          Length = 179

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +2

Query: 356 AHKVFVYGTLKRNEPNHGTMTNPENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGT- 532
           A  VFVYGTLKR  PNH  +    +G +  +    T     L++   Y+VPFLL  P + 
Sbjct: 22  ATMVFVYGTLKRGFPNHPLLA--ASG-SPLVGAASTATPASLVVG-PYSVPFLLPRPSSS 77

Query: 533 --GYNVKGEIYEVDDKMLSNLDILE 601
              + V GE+Y V  + L +LD LE
Sbjct: 78  SGSHLVSGELYAVSPRALVDLDALE 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,851,386
Number of Sequences: 37544
Number of extensions: 279789
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)