Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_O04
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 157 9e-40
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 155 4e-39
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 33 0.018
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 29 0.39
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 2.8
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 26 3.7
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 4.8
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 6.4
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 8.4
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.4
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 157 bits (381), Expect = 9e-40
Identities = 71/122 (58%), Positives = 95/122 (77%)
Frame = +3
Query: 102 IVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 281
I+KKRTK F RHQSDR+ ++ +WRKP GID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 282 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 461
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 462 QE 467
QE
Sbjct: 126 QE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 155 bits (376), Expect = 4e-39
Identities = 71/122 (58%), Positives = 94/122 (77%)
Frame = +3
Query: 102 IVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 281
IVKKRTK F RHQSD + ++ +WRKP GID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 282 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 461
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 462 QE 467
QE
Sbjct: 126 QE 127
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 33.5 bits (73), Expect = 0.018
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -1
Query: 317 FNIVN*DLTESIWEHMTGLLVGTVTDVGHQVLTLESPADSVVNTXRF-TPIPLKFV--IA 147
F+I + D+ ++ H+ G+ T + G + +T DS + + TP+P+KFV IA
Sbjct: 381 FDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIA 438
Query: 146 IRLMPDKSLRP 114
+ MP +LRP
Sbjct: 439 MHSMPRVALRP 449
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 470 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 348
VL + R+ HSD + + +F DQ +RR + LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 282 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 455
N R+ +HN++ ++ L+ Q ++C + V ++ ++ A ++ + + ++A
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654
Query: 456 RSQENE 473
R + +
Sbjct: 655 RRESQK 660
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 141 SDRYDKLKRN-WRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVK 317
+ R D++ N RK G+ + F L NIGYG+ K + + +K +H++
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562
Query: 318 E 320
E
Sbjct: 563 E 563
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 126 FIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYG 251
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 6.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 93 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNI 242
R T VK+R K I+ S+ + KP G R R+ K Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 335 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPG 466
D K+ R+ +E A K P + S C R+PP G
Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +3
Query: 354 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 440
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,161
Number of Sequences: 5004
Number of extensions: 37013
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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