Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_O04
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 187 5e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 168 2e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 161 3e-40
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 130 8e-31
12_02_1193 + 26891619-26892456,26892545-26893884 29 2.8
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.7
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 6.4
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 27 8.5
07_03_0808 - 21668100-21669092 27 8.5
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 8.5
03_05_0796 + 27787401-27788831 27 8.5
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 8.5
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 187 bits (455), Expect = 5e-48
Identities = 91/130 (70%), Positives = 103/130 (79%)
Frame = +3
Query: 84 PVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKK 263
P+ IVKKR K+F R SDRY LK +WR+P GID+RVRR+FKG LMPNIGYGS+KK
Sbjct: 4 PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
Query: 264 TRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNA 443
TRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN
Sbjct: 64 TRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNK 123
Query: 444 AARLRSQENE 473
ARLRSQE+E
Sbjct: 124 LARLRSQEDE 133
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 168 bits (408), Expect = 2e-42
Identities = 80/118 (67%), Positives = 93/118 (78%)
Frame = +3
Query: 84 PVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKK 263
P+ IVKKR K+F R SDRY LK +WR+P GID+RVRR+FKG LMPNIGYGS+KK
Sbjct: 4 PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
Query: 264 TRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
TRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 64 TRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 161 bits (391), Expect = 3e-40
Identities = 76/102 (74%), Positives = 86/102 (84%)
Frame = +3
Query: 168 NWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 347
+WR+P GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 348 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQENE 473
YCAEIAH VS+KKRK IVERA QL I VTN ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 84 PVYRPTIVKKRTKRFIRHQSDRYDKLK 164
P+ IVKKR K+F R SDRY LK
Sbjct: 4 PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 130 bits (313), Expect = 8e-31
Identities = 61/96 (63%), Positives = 74/96 (77%)
Frame = +3
Query: 60 ETYKXAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPN 239
+TY+ + P+ IVKKR K+F R SDRY LK +WR+P GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 240 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 347
IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 28.7 bits (61), Expect = 2.8
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +2
Query: 200 SPQAIQGSILDAQHRLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCL 379
+PQ +Q R+R Q + APK PSS A + DDA++ +R
Sbjct: 327 NPQKADDEAGPSQKRMRGQVK---LAPKKRRVPPSSDS-DADDEDDAEEHDGEEEREEEE 382
Query: 380 FEEAEADRGKSPAAQHQSDECGRSP-PVPG 466
EA AD+ A + ++D G +P P PG
Sbjct: 383 EVEAVADKATGEAVEDRADTPGYTPTPGPG 412
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 413 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 330
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 365 RSRCLFEEAEADRGKSPAAQHQSDECGRSPPVP 463
RS ++A+RG SPAA H D SP P
Sbjct: 40 RSSTSRRHSDANRGNSPAAPHSLDIYISSPAAP 72
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 296 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEAD-RGKSPAAQHQSDE 439
GP S G LD K V RRD +R L +A + AA SDE
Sbjct: 35 GPGSFADEHGELDQEKFAVSRRDAARRLIAAVDATLLARRAAAGEGSDE 83
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +2
Query: 236 QHRLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSP 415
QH+ + PS AP+ P P S R + + R RS C A K
Sbjct: 149 QHQPALRHLPPSTAPRRTPPPPGSASPRPSSPESFSSATGARFRSTCFSTRYSAIPSKKE 208
Query: 416 AAQHQSDECGRSPP 457
A S R PP
Sbjct: 209 A--RSSSPASREPP 220
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 464 LGPEASGRIRHSDAELLGSFHDQL 393
L PE S R +S A+LL FH QL
Sbjct: 30 LNPETSARAANSFAKLLARFHVQL 53
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 386 EAEADRGKSPAAQHQSDECGR 448
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +3
Query: 234 PNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL---EILMMQNRKYCAEIAH 371
P ++K+R + NGFRKV HN L ++L+ N KY A H
Sbjct: 270 PRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLH 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,754,616
Number of Sequences: 37544
Number of extensions: 255778
Number of successful extensions: 842
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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