Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O04
         (500 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...   229   4e-60
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...   229   4e-60
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...   229   4e-60
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...   229   4e-60
BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.       116   5e-26
BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.      49   1e-05
BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.      47   4e-05
U35113-1|AAA78935.1|  715|Homo sapiens mta1 protein.                   31   3.0  
BC142941-1|AAI42942.1|  715|Homo sapiens metastasis associated 1...    31   3.0  
BC009443-1|AAH09443.2|  263|Homo sapiens MTA1 protein protein.         31   3.0  
D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.       29   9.1  
BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor ...    29   9.1  
AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.                 29   9.1  

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score =  229 bits (560), Expect = 4e-60
 Identities = 106/133 (79%), Positives = 118/133 (88%)
 Frame = +3

Query: 75  AIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGS 254
           A+ P+ +P IVKKRTK+FIRHQSDRY K+KRNWRKP GIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 255 NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 434
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 435 TNAAARLRSQENE 473
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  229 bits (560), Expect = 4e-60
 Identities = 106/133 (79%), Positives = 118/133 (88%)
 Frame = +3

Query: 75  AIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGS 254
           A+ P+ +P IVKKRTK+FIRHQSDRY K+KRNWRKP GIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 255 NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 434
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 435 TNAAARLRSQENE 473
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  229 bits (560), Expect = 4e-60
 Identities = 106/133 (79%), Positives = 118/133 (88%)
 Frame = +3

Query: 75  AIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGS 254
           A+ P+ +P IVKKRTK+FIRHQSDRY K+KRNWRKP GIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 255 NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 434
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 435 TNAAARLRSQENE 473
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  229 bits (560), Expect = 4e-60
 Identities = 106/133 (79%), Positives = 118/133 (88%)
 Frame = +3

Query: 75  AIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGS 254
           A+ P+ +P IVKKRTK+FIRHQSDRY K+KRNWRKP GIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 255 NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 434
           NKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRV
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 435 TNAAARLRSQENE 473
           TN  ARLRS+ENE
Sbjct: 123 TNPNARLRSEENE 135


>BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.
          Length = 107

 Score =  116 bits (279), Expect = 5e-26
 Identities = 54/81 (66%), Positives = 64/81 (79%)
 Frame = +3

Query: 231 MPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVER 410
           MPNIGYG NKKT+H+LP+GF K LVHNVKELE+L++ N+ YC EI H VSSK  K I+ER
Sbjct: 27  MPNIGYGRNKKTKHILPSGFWKFLVHNVKELEVLLVSNKSYCVEITHDVSSKNCKAILER 86

Query: 411 AQQLSIRVTNAAARLRSQENE 473
           A Q+ IRVTNA A L S E+E
Sbjct: 87  AAQVVIRVTNANASLHSAESE 107


>BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.
          Length = 33

 Score = 48.8 bits (111), Expect = 1e-05
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +3

Query: 75  AIXPVYRPTIVKKRTKRFIRHQSDRYDKLKR 167
           A+  + +P IVKKRTK+FIRHQSDRY K+KR
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33


>BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.
          Length = 82

 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +3

Query: 75  AIXPVYRPTIVKKRTKRFIRHQSDRYDKLK 164
           A+  + +P IVKKRTK+FIRHQSDRY K+K
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32


>U35113-1|AAA78935.1|  715|Homo sapiens mta1 protein.
          Length = 715

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 162 KRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 284
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM P+
Sbjct: 582 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHMGPS 618


>BC142941-1|AAI42942.1|  715|Homo sapiens metastasis associated 1
           protein.
          Length = 715

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 162 KRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 284
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM P+
Sbjct: 582 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHMGPS 618


>BC009443-1|AAH09443.2|  263|Homo sapiens MTA1 protein protein.
          Length = 263

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 162 KRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 284
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM P+
Sbjct: 130 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHMGPS 166


>D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 267 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 401
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 172 RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 216


>BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor
           protein (cytoplasmic tail) binding protein 2 protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 267 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 401
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 76  RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120


>AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 267 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 401
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 76  RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,572,994
Number of Sequences: 237096
Number of extensions: 1358166
Number of successful extensions: 3750
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3750
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)