Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O04
         (500 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   235   2e-62
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   235   2e-62
Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   232   2e-61
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   232   2e-61
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   232   2e-61
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   232   2e-61
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   232   2e-61
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   176   2e-44
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    69   4e-12
AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA...    28   6.2  
AE014296-1525|AAF50362.1|  438|Drosophila melanogaster CG13307-P...    28   8.2  

>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  235 bits (575), Expect = 2e-62
 Identities = 108/136 (79%), Positives = 117/136 (86%)
 Frame = +3

Query: 66  YKXAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIG 245
           +K  I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 246 YGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLS 425
           YGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 426 IRVTNAAARLRSQENE 473
           +R+TN   RLRSQENE
Sbjct: 132 VRLTNPNGRLRSQENE 147


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  235 bits (575), Expect = 2e-62
 Identities = 108/136 (79%), Positives = 117/136 (86%)
 Frame = +3

Query: 66  YKXAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIG 245
           +K  I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 246 YGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLS 425
           YGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 426 IRVTNAAARLRSQENE 473
           +R+TN   RLRSQENE
Sbjct: 132 VRLTNPNGRLRSQENE 147


>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  232 bits (568), Expect = 2e-61
 Identities = 107/132 (81%), Positives = 115/132 (87%)
 Frame = +3

Query: 78  IXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSN 257
           I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 3   IRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 62

Query: 258 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
           K+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 438 NAAARLRSQENE 473
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  232 bits (568), Expect = 2e-61
 Identities = 107/132 (81%), Positives = 115/132 (87%)
 Frame = +3

Query: 78  IXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSN 257
           I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 3   IRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 62

Query: 258 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
           K+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 438 NAAARLRSQENE 473
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  232 bits (568), Expect = 2e-61
 Identities = 107/132 (81%), Positives = 115/132 (87%)
 Frame = +3

Query: 78  IXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSN 257
           I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 3   IRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 62

Query: 258 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
           K+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 438 NAAARLRSQENE 473
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  232 bits (568), Expect = 2e-61
 Identities = 107/132 (81%), Positives = 115/132 (87%)
 Frame = +3

Query: 78  IXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSN 257
           I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 3   IRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 62

Query: 258 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
           K+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 438 NAAARLRSQENE 473
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  232 bits (568), Expect = 2e-61
 Identities = 107/132 (81%), Positives = 115/132 (87%)
 Frame = +3

Query: 78  IXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSN 257
           I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 3   IRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 62

Query: 258 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 437
           K+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R+T
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLT 122

Query: 438 NAAARLRSQENE 473
           N   RLRSQENE
Sbjct: 123 NPNGRLRSQENE 134


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  176 bits (428), Expect = 2e-44
 Identities = 83/118 (70%), Positives = 94/118 (79%)
 Frame = +3

Query: 78  IXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPXGIDNRVRRRFKGQYLMPNIGYGSN 257
           I P YRP IVKKRTK FIRHQSDRY KL   WRKP GIDNRV RRFKGQYLMPNIGYGSN
Sbjct: 3   IRPAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYGSN 62

Query: 258 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 431
           K+TRHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 63  KRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 40/98 (40%), Positives = 54/98 (55%)
 Frame = +2

Query: 188 Y*QQSPQAIQGSILDAQHRLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDR 367
           Y QQS   +QG++ DAQHRLR +Q  P +A   I   P +Q  RAG    A+  +LRRDR
Sbjct: 7   YRQQSASPLQGTVSDAQHRLRIEQAHPPHAAHRIQEVPGAQRARAGGPAHAEPRLLRRDR 66

Query: 368 SRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGERINI 481
            R L +EA+ D     AA     +  RSP    ER+++
Sbjct: 67  PRRLLQEAQGDCRARQAAVGPPHQPQRSPAFSRERVSL 104


>AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA
           protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 326 NLDDAKQEVLRRDRSRCL-FEEAEADRGKSPAAQHQS 433
           NL  ++   LRR RSRCL +      R  SP+ +H S
Sbjct: 132 NLSRSRSRTLRRSRSRCLGWSCWSLRRSPSPSRRHHS 168


>AE014296-1525|AAF50362.1|  438|Drosophila melanogaster CG13307-PA
           protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 193 TTESAGDSRVNT*CPTSVTVPTRRPVICSQMDS 291
           TTES+ DS V T  PT+VT P     +C+Q ++
Sbjct: 386 TTESSTDSTVTTETPTTVT-PLTPAQMCAQRNA 417


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,156
Number of Sequences: 53049
Number of extensions: 430975
Number of successful extensions: 1220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)