Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O03
         (425 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         28   0.16 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   4.5  
AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    23   4.5  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    22   7.9  

>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 65  KLYSKMNLKQFTTKNAVLLIMIPALGGLHYGWYKLQSVDSL 187
           +LY K+NL ++TT N  L + + AL  L+ G  ++  + S+
Sbjct: 180 RLYRKLNLNKYTTYNTSLTLTVYALTELN-GESEMTEISSM 219


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 158 WYKLQSVDSLVPDKDRSRLPKWLQEL 235
           W++L S   +    D+   PKWLQ L
Sbjct: 660 WHELISPLQMATVLDKYFFPKWLQTL 685


>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 147 RPPNAGIIIRRTAFLVVNCFKFIFEYNFY 61
           RP +  ++ R+TA L+++ FK+  E  +Y
Sbjct: 300 RPMSKVLLFRKTANLLLDHFKWEKENEYY 328


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 325 HNIILYEQGNHQSIYIYSCFFIL 257
           HN+++   G+ +S + Y+  F+L
Sbjct: 27  HNVVVGRNGSGKSNFFYAIQFVL 49


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,572
Number of Sequences: 2352
Number of extensions: 7154
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 34867302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)