Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O03
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 217 RKPTAIFVWHQTINALQL 164
           RKP  I  WH  +NA  L
Sbjct: 78  RKPLPIEPWHGVLNATVL 95


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 217 RKPTAIFVWHQTINALQL 164
           RKP  I  WH  +NA  L
Sbjct: 78  RKPLPIEPWHGVLNATVL 95


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 348 YDCVTWWKIC 377
           Y C  WWKIC
Sbjct: 486 YPCC-WWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 348 YDCVTWWKIC 377
           Y C  WWKIC
Sbjct: 539 YPCC-WWKIC 547


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 16  LIPTGFY*LTICNASIKIIFENEFK 90
           + P  F  L IC   I + ++ EFK
Sbjct: 475 VFPASFGLLNICYWVIYVTYQEEFK 499


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +2

Query: 152 YGWYKLQSVDSLVPDKDRSRLPKWLQELGF*NINXKNKKTAVNVY 286
           Y W +L     +    D+   PKWLQ L     +  N     N Y
Sbjct: 631 YEWKELIPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWY 675


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,230
Number of Sequences: 438
Number of extensions: 1877
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)