Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_O01
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.22 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   0.50 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   3.6  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   3.6  
AL021386-2|CAA16165.1|  240|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 121  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 225
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 319  YHGSSSQL*QNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 167
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +1

Query: 106  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 276
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 277  GRQHFVTVDCCCHGS 321
            GR    +  C C  S
Sbjct: 1250 GRH--CSQSCRCANS 1262


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +1

Query: 106  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 276
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 277  GRQHFVTVDCCCHGS 321
            GR    +  C C  S
Sbjct: 1250 GRH--CSQSCRCANS 1262


>AL021386-2|CAA16165.1|  240|Caenorhabditis elegans Hypothetical
           protein F57E7.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 166 HWGSVDSISGSRARFQLSGNSGRKHSR-CCTSILRKFSGRQHFVTVDC 306
           HW ++D I+  +       N GRK  R     +L KF  +++++   C
Sbjct: 101 HWVTIDPINREQVWSSSGLNLGRKEVRDAVKKLLYKFKAKKNYINYLC 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,564,130
Number of Sequences: 27780
Number of extensions: 177921
Number of successful extensions: 306
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)