Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N23
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   188   6e-49

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  188 bits (458), Expect = 6e-49
 Identities = 96/205 (46%), Positives = 121/205 (59%)
 Frame = +1

Query: 1   IVXNGAGTG*TVYPPLSSNIAHRGRSVXLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 180
           +   G G G TVYPPLSS  +H G ++ LAI SL L GISS                   
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 181 SFDQLPLFV*AVXITAFXXXXXXXXXXGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 360
           S  Q+PLF  A+ IT+           G + +L +DRNLNTSF+ P GGGDP+LYQHLF 
Sbjct: 184 SLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFW 243

Query: 361 FFGHPEVYILILPXFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVR 540
           FFGHPEVYILI+P FG++SHII      K  F                 +V +HH+FTV 
Sbjct: 244 FFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVG 302

Query: 541 IXIDTRAYFTSATIIIAVPTGIKIF 615
           + +DTRAYF++AT++IA+PTGIKIF
Sbjct: 303 LDVDTRAYFSAATMVIAIPTGIKIF 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,085
Number of Sequences: 5004
Number of extensions: 25669
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)