Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N20
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 85 7e-18
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 79 3e-16
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 75 6e-15
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 27 2.6
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 26 3.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 7.9
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 25 7.9
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 85.0 bits (201), Expect = 7e-18
Identities = 38/64 (59%), Positives = 45/64 (70%)
Frame = +3
Query: 381 PGXAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVXLNXATVNMLRIAXPYIAWG 560
P KL FVIRIRGIN + PK RK++QL L QINNGVFV N AT ML++ PY+ +G
Sbjct: 86 PDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYG 145
Query: 561 YPNL 572
PNL
Sbjct: 146 IPNL 149
Score = 70.1 bits (164), Expect = 2e-13
Identities = 35/82 (42%), Positives = 51/82 (62%)
Frame = +2
Query: 152 SKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRIXERD 331
SK+ PES+LK +K +E R R+ +++++ KK I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 332 EIRLARQARNRGNYYVPGXSQI 397
+I L R+AR GNYYVP +++
Sbjct: 70 QIELGRKARAEGNYYVPDETKL 91
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 79.4 bits (187), Expect = 3e-16
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +3
Query: 381 PGXAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVXLNXATVNMLRIAXPYIAWG 560
P KL FV+RIRGIN + PK RK++QL L QINNG+FV N A ML++ PY+ +G
Sbjct: 85 PHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYG 144
Query: 561 YPN 569
PN
Sbjct: 145 IPN 147
Score = 64.1 bits (149), Expect = 1e-11
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = +2
Query: 173 PESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRIXERDEIRLARQ 352
PES+LK K ++ R + +++S+ KK I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 353 ARNRGNYYVP 382
AR GNY+VP
Sbjct: 76 ARAEGNYFVP 85
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 75.4 bits (177), Expect = 6e-15
Identities = 35/64 (54%), Positives = 42/64 (65%)
Frame = +3
Query: 381 PGXAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVXLNXATVNMLRIAXPYIAWG 560
P KL FVIRI G+ + PK+RKVL+L L +INN VFV N A MLRI PY+ +G
Sbjct: 84 PDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYG 143
Query: 561 YPNL 572
PNL
Sbjct: 144 IPNL 147
Score = 65.3 bits (152), Expect = 6e-12
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +2
Query: 173 PESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRIXERDEIRLARQ 352
PE +LK RK E R R++ + ++ + K +E FKRAE ++ YR ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 353 ARNRGNYYVPGXSQI 397
A+N+G+ +VP +++
Sbjct: 75 AKNKGDIFVPDETKL 89
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 135 SKGRKTVRSCLLYQSQCSSIVRGERLFALXDYRLR*RGVLLPSRRXGKSSRGLNSTSR 308
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +2
Query: 254 SAIKKXREIFKRAEQYVKEYRIXERDEIRLARQARNRGN 370
+++K+ REI ++ E+ +R+ ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 287 RAEQYVKEYRIXERDEIRLARQARNRGNYYVP----GXSQIGICHPNPWYQPS 433
+A Q ++ + +RL N+ N+++P G S G + N QP+
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGEVTGPSSFGAIYYNRGRQPN 361
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 152 SKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIK-KXREIFKRAEQYVKEYRIXER 328
+K LP++ E R+ REA R R Q ++S + + R+ F RAE+ E E+
Sbjct: 241 AKHLPSL-ERFRSEREAREAARELRRQQDNAYQASLARDRERQAFARAEE---ERLAKEK 296
Query: 329 DEIRLARQARNR 364
+E + ++ + +
Sbjct: 297 EEREIVQKKKKQ 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,009
Number of Sequences: 5004
Number of extensions: 30969
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -