Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N20
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 91 8e-19
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 89 2e-18
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 55 5e-08
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 28 6.1
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 27 8.0
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 27 8.0
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 90.6 bits (215), Expect = 8e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = +3
Query: 390 AKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVXLNXATVNMLRIAXPYIAWGYPN 569
AKL FV+RIRGIN + PK RK+LQL LRQI NGVF+ +N AT+NMLR PY+A+GYPN
Sbjct: 84 AKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPN 143
Query: 570 L 572
L
Sbjct: 144 L 144
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/74 (41%), Positives = 45/74 (60%)
Frame = +2
Query: 158 KLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRIXERDEI 337
K VPESVLK RKR E R + L + A++ + IF RA+QY +EY E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 338 RLARQARNRGNYYV 379
+L R+AR +G +YV
Sbjct: 67 QLKREARMKGGFYV 80
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +3
Query: 393 KLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVXLNXATVNMLRIAXPYIAWGYPNL 572
KL FV+RIRGIN + PK RK+LQL LRQI NGVF+ +N AT+NMLR PY+A+GYPNL
Sbjct: 84 KLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNL 143
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/70 (38%), Positives = 43/70 (61%)
Frame = +2
Query: 170 VPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRIXERDEIRLAR 349
VPESVL+ RKR E + + + +I+ + IF RA+QY +EY E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 350 QARNRGNYYV 379
+AR +G +YV
Sbjct: 70 EARMKGGFYV 79
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +3
Query: 390 AKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVXLNXATVNMLRIAXPYIAWGYPN 569
+KL F IRI G + P +R++L+ L Q+ GVF+ AT+ L + P+I +G+PN
Sbjct: 86 SKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPN 145
Query: 570 L 572
L
Sbjct: 146 L 146
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +2
Query: 143 KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRIX 322
+E +++LP V E+VLK RK E + +R + KR E +V+E+R
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 323 ERDEIRLARQARNR 364
E D +R+ + + R
Sbjct: 63 ELDFVRMKTRLKVR 76
>04_03_0554 -
17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 197 KRREALRTXRLQVTLKRRSSAIKKXREIFKR 289
+RR+ R Q+TL+ + +KK RE +KR
Sbjct: 219 RRRQRDRERYAQMTLQEKEEKLKKRREAYKR 249
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 236 TLKRRSSAIKKXREIF--KRAEQYVKE-YRIXERDEIRLARQARNRGNYY 376
TL+ R+ IK RE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 173 PESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRI 319
P S L H K+R R L+ L + +KK RE AE K+ ++
Sbjct: 132 PRSPL-HEKKRAGTRVAELETKLGKVQDELKKLREQLATAEAAKKDAQV 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,449
Number of Sequences: 37544
Number of extensions: 204764
Number of successful extensions: 432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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