Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N20
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    96   1e-20
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81107-9|CAB03234.2|  304|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z68335-4|CAA92732.2|  304|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 43/63 (68%), Positives = 50/63 (79%)
 Frame = +3

Query: 381 PGXAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVXLNXATVNMLRIAXPYIAWG 560
           P   K+AFV+RIRGINQ+ PK RK LQ+  LRQINNGVFV LN AT+ +LRI  PY+AWG
Sbjct: 80  PAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWG 139

Query: 561 YPN 569
           YPN
Sbjct: 140 YPN 142



 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 34/82 (41%), Positives = 54/82 (65%)
 Frame = +2

Query: 152 SKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYRIXERD 331
           +KK+P VPE+VLK RK+R   RT   Q  +   +   +K  + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 332 EIRLARQARNRGNYYVPGXSQI 397
            +RL R+A  +G++YVP   ++
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKV 85


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 137 KGKEDSKKLPAVPESVLKHR-KRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEY 313
           K + D+K++    E   K + KRRE  +  +  +  K RS   +K RE+ +  E+  ++ 
Sbjct: 174 KAEMDAKRVAEEEEERRKEKEKRREEKKKQKELLKEKERSERKEKERELEREKEKSREKE 233

Query: 314 RIXERDEIRLARQARNR 364
           R  ER++ R   + + R
Sbjct: 234 REKEREKEREKEREKER 250


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 176 ESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQ 298
           +  LK++KRR +  T  +Q T+KR     +K  +I+++ ++
Sbjct: 208 QKTLKNKKRRSSTTTEDVQKTIKRWHEEQRKLSKIYEKQKE 248


>Z81107-9|CAB03234.2|  304|Caenorhabditis elegans Hypothetical
           protein R07H5.10 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +2

Query: 140 GKEDSKK----LPAV--PESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQY 301
           G+EDS+     LP++  P+   K+ K  E  +  +     ++ + A+K+ RE  K  E+Y
Sbjct: 148 GEEDSEMHTGALPSIDTPKKERKYEKVSEDQKDEKYSSKREKNNLAVKRCREKKKNEEKY 207

Query: 302 VKE 310
            KE
Sbjct: 208 KKE 210


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +2

Query: 143 KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYR 316
           KE+  +L  +  S LK  K + ALR  RLQ   +  SS I    +   +AE  +++YR
Sbjct: 30  KEEISQLRDINHS-LKEEKAQWALRQ-RLQNAEQSESSLINMLEDRLNQAENQIQDYR 85


>Z68335-4|CAA92732.2|  304|Caenorhabditis elegans Hypothetical
           protein R07H5.10 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +2

Query: 140 GKEDSKK----LPAV--PESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQY 301
           G+EDS+     LP++  P+   K+ K  E  +  +     ++ + A+K+ RE  K  E+Y
Sbjct: 148 GEEDSEMHTGALPSIDTPKKERKYEKVSEDQKDEKYSSKREKNNLAVKRCREKKKNEEKY 207

Query: 302 VKE 310
            KE
Sbjct: 208 KKE 210


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +2

Query: 143 KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYR 316
           KE+  +L  +  S LK  K + ALR  RLQ   +  SS I    +   +AE  +++YR
Sbjct: 30  KEEISQLRDINHS-LKEEKAQWALRQ-RLQNAEQSESSLINMLEDRLNQAENQIQDYR 85


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +2

Query: 143 KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKXREIFKRAEQYVKEYR 316
           KE+  +L  +  S LK  K + ALR  RLQ   +  SS I    +   +AE  +++YR
Sbjct: 30  KEEISQLRDINHS-LKEEKAQWALRQ-RLQNAEQSESSLINMLEDRLNQAENQIQDYR 85


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 233 VTLKRRSSAIKKXREIFKRAEQYVKEYRIXERDEIRLARQARNRGNYYVPGXSQI 397
           ++LK     +KK  E      Q+VKE    E + ++   ++ N+ ++Y+   S I
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSI 55


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -2

Query: 312 YSLTYCSALLKISLFFLMAEERLFSVTCNLXVRRASLLLRCLSTDSGTAGSFLLSSFPLT 133
           YS+     L+K+S +FL  + + +S   +  + R  ++++ ++        FL+   PLT
Sbjct: 24  YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82

Query: 132 G 130
           G
Sbjct: 83  G 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,084
Number of Sequences: 27780
Number of extensions: 180959
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)