Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N19
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 57 7e-10
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 55 2e-09
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 27 0.62
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 27 0.82
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.4
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 1.9
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 2.5
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 3.3
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 24 4.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 24 5.8
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 23 7.7
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 23 7.7
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 23 7.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 23 7.7
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 56.8 bits (131), Expect = 7e-10
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 104 KMEVTQHAKYTCSFRGKDAMKRSCVGIWSC--KRCKRTVPXXAWVFXXXXXXXXXXXVRR 277
K+EV QH++Y C F G++ +KR+ GIW C K CK+ + AW +RR
Sbjct: 28 KIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRR 87
Query: 278 LRE 286
LRE
Sbjct: 88 LRE 90
Score = 46.0 bits (104), Expect = 1e-06
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 22 MAKRTKKVGITGKYGTRYXASLRKMVNQ 105
M KRTKKVG+TGKYG RY ASLR+ V +
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRK 28
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 55.2 bits (127), Expect = 2e-09
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 104 KMEVTQHAKYTCSFRGKDAMKRSCVGIWSC--KRCKRTVPXXAWVFXXXXXXXXXXXVRR 277
K+EV QH++Y C F G+ +KR+ GIW C K C +T+ AW +RR
Sbjct: 28 KIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRR 87
Query: 278 LRE 286
LRE
Sbjct: 88 LRE 90
Score = 46.0 bits (104), Expect = 1e-06
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 22 MAKRTKKVGITGKYGTRYXASLRKMVNQ 105
M KRTKKVG+TGKYG RY ASLR+ V +
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRK 28
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 27.1 bits (57), Expect = 0.62
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 154 GCYETFLCRHLVL*AMQEDCTXXSLGILH 240
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 0.82
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 213 TVLLHRLQDQMPTQERFIASLPRNEQVYFACWVTS 109
T +L ++ Q+ T F+A + NE +FA W TS
Sbjct: 70 TSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 1.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 119 QHAKYTCSFRGKDAMKRSCVGIWSCKRCKR 208
+H K T S R +K C +W C+ CK+
Sbjct: 15 RHRKIT-SCRECHRLKLKCDRVWPCENCKK 43
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 1.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 162 IASLPRNEQVYFACWVTSILVDHFT*RGTVTCAIFASNSNLFGT 31
+ ++P NE V+ ++ + D FT +T I ASN N FG+
Sbjct: 534 VLNIPPNEDVFPD---SNPVFDEFTNISNLTSPIEASNGNTFGS 574
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 2.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 210 VLLHRLQDQMPTQERFIASLPRNEQV 133
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 3.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 5 RRGLPXWPNVPKRLELLANMAHVTVPLYVKWSTKMEVTQHAKYT 136
+RG P P +++ L + V++ L + W + E HA+ T
Sbjct: 330 KRGRP--PGARNKIKRLRSEPSVSLTLSISWYERFEKLMHAQNT 371
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 4.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 2 YRRGLPXWPNVPKRLELL 55
YR+ LP P++P R+E L
Sbjct: 427 YRKRLPHSPSMPSRVEFL 444
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 23.8 bits (49), Expect = 5.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 123 CWVTSILVDHFT*RGT 76
CW+T +L+DH R T
Sbjct: 174 CWLTYVLLDHDVSRAT 189
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 23.4 bits (48), Expect = 7.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 285 SRNLLTADVHDEAAVVEN 232
SRNL T + +DE ++++N
Sbjct: 603 SRNLSTVNPYDEGSIIKN 620
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 140 SKYTLRVGLLPSWLTILRREAX*RVPYL 57
SKY LR+ L +W ++L A V YL
Sbjct: 1369 SKYFLRIATLSAWASLLVHSA--NVSYL 1394
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 23.4 bits (48), Expect = 7.7
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2
Query: 182 IWSCKRCKRT 211
IW+CK C++T
Sbjct: 65 IWTCKNCRKT 74
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.4 bits (48), Expect = 7.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 70 VCHICQ*FQPFWYVWP 23
+ ++ Q FQ WY WP
Sbjct: 1251 IVYLVQDFQRLWYHWP 1266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,487
Number of Sequences: 5004
Number of extensions: 21789
Number of successful extensions: 71
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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