Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N19
         (307 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071725-1|AAL49347.1|   92|Drosophila melanogaster RH41593p pro...    93   8e-20
AY071189-1|AAL48811.1|   92|Drosophila melanogaster RE23595p pro...    93   8e-20
AE014134-878|AAN10530.1|   92|Drosophila melanogaster CG5827-PB,...    93   8e-20
AE014134-877|AAF52217.1|   92|Drosophila melanogaster CG5827-PA,...    93   8e-20
AE014296-3238|AAF49100.3| 1736|Drosophila melanogaster CG8334-PA...    28   2.6  
AE014134-2074|AAF53104.1|  129|Drosophila melanogaster CG14929-P...    28   2.6  

>AY071725-1|AAL49347.1|   92|Drosophila melanogaster RH41593p
           protein.
          Length = 92

 Score = 92.7 bits (220), Expect = 8e-20
 Identities = 42/67 (62%), Positives = 47/67 (70%)
 Frame = +2

Query: 92  KWSTKMEVTQHAKYTCSFRGKDAMKRSCVGIWSCKRCKRTVPXXAWVFXXXXXXXXXXXV 271
           K   KME+TQH+KYTCSF GKD+MKR+ VGIWSCKRCKRTV   AWV+           V
Sbjct: 24  KMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAV 83

Query: 272 RRLREXK 292
           RRLRE K
Sbjct: 84  RRLRETK 90



 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = +1

Query: 22  MAKRTKKVGITGKYGTRYXASLRKMVNQ 105
           MAKRTKKVGI GKYGTRY ASLRKMV +
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMVKK 28


>AY071189-1|AAL48811.1|   92|Drosophila melanogaster RE23595p
           protein.
          Length = 92

 Score = 92.7 bits (220), Expect = 8e-20
 Identities = 42/67 (62%), Positives = 47/67 (70%)
 Frame = +2

Query: 92  KWSTKMEVTQHAKYTCSFRGKDAMKRSCVGIWSCKRCKRTVPXXAWVFXXXXXXXXXXXV 271
           K   KME+TQH+KYTCSF GKD+MKR+ VGIWSCKRCKRTV   AWV+           V
Sbjct: 24  KMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAV 83

Query: 272 RRLREXK 292
           RRLRE K
Sbjct: 84  RRLRETK 90



 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = +1

Query: 22  MAKRTKKVGITGKYGTRYXASLRKMVNQ 105
           MAKRTKKVGI GKYGTRY ASLRKMV +
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMVKK 28


>AE014134-878|AAN10530.1|   92|Drosophila melanogaster CG5827-PB,
           isoform B protein.
          Length = 92

 Score = 92.7 bits (220), Expect = 8e-20
 Identities = 42/67 (62%), Positives = 47/67 (70%)
 Frame = +2

Query: 92  KWSTKMEVTQHAKYTCSFRGKDAMKRSCVGIWSCKRCKRTVPXXAWVFXXXXXXXXXXXV 271
           K   KME+TQH+KYTCSF GKD+MKR+ VGIWSCKRCKRTV   AWV+           V
Sbjct: 24  KMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAV 83

Query: 272 RRLREXK 292
           RRLRE K
Sbjct: 84  RRLRETK 90



 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = +1

Query: 22  MAKRTKKVGITGKYGTRYXASLRKMVNQ 105
           MAKRTKKVGI GKYGTRY ASLRKMV +
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMVKK 28


>AE014134-877|AAF52217.1|   92|Drosophila melanogaster CG5827-PA,
           isoform A protein.
          Length = 92

 Score = 92.7 bits (220), Expect = 8e-20
 Identities = 42/67 (62%), Positives = 47/67 (70%)
 Frame = +2

Query: 92  KWSTKMEVTQHAKYTCSFRGKDAMKRSCVGIWSCKRCKRTVPXXAWVFXXXXXXXXXXXV 271
           K   KME+TQH+KYTCSF GKD+MKR+ VGIWSCKRCKRTV   AWV+           V
Sbjct: 24  KMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAV 83

Query: 272 RRLREXK 292
           RRLRE K
Sbjct: 84  RRLRETK 90



 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = +1

Query: 22  MAKRTKKVGITGKYGTRYXASLRKMVNQ 105
           MAKRTKKVGI GKYGTRY ASLRKMV +
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMVKK 28


>AE014296-3238|AAF49100.3| 1736|Drosophila melanogaster CG8334-PA
           protein.
          Length = 1736

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 95  WSTKMEVTQHAKYTCSFRGKDAMKRSCV 178
           W + M+ TQH  +TC +  + A +R+ V
Sbjct: 349 WLSWMQYTQHTTHTCDYCKRTASQRTAV 376


>AE014134-2074|AAF53104.1|  129|Drosophila melanogaster CG14929-PA,
           isoform A protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 41  RLELLANMAHVTVPLYVKWS---TKMEVTQHAKYTCSFRGKDAMKRSCVGIWSCKRCKRT 211
           RL L+A   + T  L +  S   TK+ + + AK   S   +D M R C   W C +CK  
Sbjct: 7   RLALVAGAVYGTQELGIWESSDHTKV-LFEGAKREVSPYAEDLMNRFCC--WRCDKCKED 63

Query: 212 VPXXAW 229
           V    W
Sbjct: 64  VQVKPW 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,131
Number of Sequences: 53049
Number of extensions: 237875
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 568694034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)