Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N19
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...    72   7e-14
Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 30/67 (44%), Positives = 42/67 (62%)
 Frame = +2

Query: 92  KWSTKMEVTQHAKYTCSFRGKDAMKRSCVGIWSCKRCKRTVPXXAWVFXXXXXXXXXXXV 271
           K + K+EV QH++YTCSF GK+AMKR   GIW+C +C + V   A+V+           +
Sbjct: 24  KMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTI 83

Query: 272 RRLREXK 292
           RRLR+ K
Sbjct: 84  RRLRDLK 90



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +1

Query: 22  MAKRTKKVGITGKYGTRYXASLRKMVNQ 105
           MAKRTKKVGI GKYGTRY ASLRKM  +
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKK 28


>Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical
           protein R11A8.3 protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 26  PNVPKRLELLANMAHVTVPLYVKWSTKMEVTQHAK 130
           P +P+ L L+A+  + T+  +  WS+ +E T H+K
Sbjct: 350 PWIPQ-LPLMAHKNYKTIITHGGWSSILETTMHSK 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,735,072
Number of Sequences: 27780
Number of extensions: 125502
Number of successful extensions: 243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)