Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N18
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    91   6e-20
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    91   6e-20
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   3.1  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   5.5  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    24   7.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.6  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 91.1 bits (216), Expect = 6e-20
 Identities = 37/49 (75%), Positives = 41/49 (83%)
 Frame = +1

Query: 31  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHW 177
           MTKGT SFG R NK+HT+CRRCG  S+HIQKS CA CGYPAAK RSY+W
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNW 49



 Score = 32.3 bits (70), Expect = 0.027
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 221 MRHLKIVRRRFRNGFKEGKPT 283
           M +LK V R F+NGF+ GKPT
Sbjct: 64  MSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 91.1 bits (216), Expect = 6e-20
 Identities = 37/49 (75%), Positives = 41/49 (83%)
 Frame = +1

Query: 31  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHW 177
           MTKGT SFG R NK+HT+CRRCG  S+HIQKS CA CGYPAAK RSY+W
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNW 49



 Score = 30.7 bits (66), Expect = 0.083
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 221 MRHLKIVRRRFRNGFKEGKP 280
           M +LK V R F+NGF+ GKP
Sbjct: 64  MSYLKKVHRSFKNGFRSGKP 83


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 127 KCAQCGYPAAKLRSYHWLSEG*AQEDYWNWPHASF 231
           +C  CG      +SY W S    Q D W  P  ++
Sbjct: 277 RCNSCGIVNEVPQSYDWDSFRNVQRDRWQRPELNY 311


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 67  NKTHTLCRRCGXSSYHIQKSKCAQCGYP 150
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 137 WAHFDF*M*YDDXPHLLHNVWVLFRRLPKLEVPFVI 30
           W+H D     D   H LHN W    R  K +  F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 78  YVMQKMWXIVISHSKIKMRPMWISCSKITIL 170
           + ++K W +  SHSK+   P   S  +I +L
Sbjct: 899 HFLEKQWTLYYSHSKLMFSP--FSSQRIILL 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,099
Number of Sequences: 5004
Number of extensions: 22764
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)