Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N18
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    89   9e-19
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    89   9e-19
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    88   2e-18
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477...    27   3.9  
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292     27   3.9  
04_04_1226 - 31872413-31873036                                         27   6.9  
08_01_0923 - 9095162-9095281,9095402-9095551,9095648-9095783,909...    26   9.1  

>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 89.4 bits (212), Expect = 9e-19
 Identities = 35/49 (71%), Positives = 41/49 (83%)
 Frame = +1

Query: 31  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHW 177
           M KGT SFGKRRNKTHTLC RCG  S+H+QKS C+ CGYPAA++R Y+W
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNW 49



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 179 SVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKK 295
           SVKA          MR+L+ V +RF++ F+EG    P+K
Sbjct: 50  SVKAIRRKTTGTGRMRYLRHVPKRFKSNFREGTEAAPRK 88


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 89.4 bits (212), Expect = 9e-19
 Identities = 35/49 (71%), Positives = 41/49 (83%)
 Frame = +1

Query: 31  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHW 177
           M KGT SFGKRRNKTHTLC RCG  S+H+QKS C+ CGYPAA++R Y+W
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNW 49



 Score = 32.7 bits (71), Expect = 0.10
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 179 SVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKK 295
           SVKA          MR+++ V RRF++ F+EG    P+K
Sbjct: 50  SVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRK 88


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 34/47 (72%), Positives = 40/47 (85%)
 Frame = +1

Query: 37  KGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHW 177
           KGT SFGKRRNKTHTLC RCG  S+H+QKS C+ CGYPAA++R Y+W
Sbjct: 24  KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNW 70



 Score = 32.7 bits (71), Expect = 0.10
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 179 SVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKK 295
           SVKA          MR+++ V RRF++ F+EG    P+K
Sbjct: 71  SVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRK 109


>10_08_0324 +
           16747117-16747330,16747432-16747559,16747675-16747744,
           16747832-16747988,16748089-16748701,16749132-16749653,
           16749686-16750279,16750359-16750709,16750808-16751395
          Length = 1078

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +1

Query: 55  GKRRNKTHTLCRRCGXSSYHIQKSK----CAQCGYPAAKLRSYHWLSEG 189
           G+ + K  T CR CG      +  K    CA+CG+P  K    +  SEG
Sbjct: 9   GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCKPCYEYERSEG 56


>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
          Length = 222

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 43  TSSFGKRRNKTHTLCRRCGXSSYHIQKS 126
           T +FG    K HT CR CG +S++  +S
Sbjct: 26  TYTFGTHTAK-HTFCRVCGITSFYTPRS 52


>04_04_1226 - 31872413-31873036
          Length = 207

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 273 PSLKP--LRKRLLTIFK*RMRPVPVVFLRLAFTEPV 172
           P L+P  +RKR  TI+K    P+PV    + F +P+
Sbjct: 160 PMLRPSQVRKRPSTIYKQAAGPIPVPLEDVTFAKPL 195


>08_01_0923 -
           9095162-9095281,9095402-9095551,9095648-9095783,
           9095916-9095995,9096112-9096269,9096358-9096612,
           9096804-9097205,9097287-9097408,9097623-9097741,
           9098506-9098597,9098763-9098934
          Length = 601

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 144 ISCSKITILPLAQ*RLSAGRLLELA 218
           I CSK+++L  A+  L AG++ ELA
Sbjct: 502 IDCSKLSLLQWAKPLLEAGQVTELA 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,294
Number of Sequences: 37544
Number of extensions: 155784
Number of successful extensions: 343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)