Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N18
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    86   9e-18
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    83   9e-17
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    30   0.65 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    29   0.86 
U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical pr...    27   4.6  
L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical pr...    27   6.1  
L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 85.8 bits (203), Expect = 9e-18
 Identities = 33/49 (67%), Positives = 41/49 (83%)
 Frame = +1

Query: 31  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHW 177
           MTKGT +FGK+  K+HTLC+RCG SS+HIQK +CA CGYP AK R+Y+W
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNW 49



 Score = 32.7 bits (71), Expect = 0.093
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 224 RHLKIVRRRFRNGFKEGKPTPPK 292
           RHL+ V  RFRNGF+EG    P+
Sbjct: 65  RHLRDVNARFRNGFREGTTPKPR 87


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 82.6 bits (195), Expect = 9e-17
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = +1

Query: 31  MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHW 177
           MTKGT +FGK+  K+HTLC+RCG SS+HIQK +CA CGY  AK R+Y+W
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNW 49



 Score = 29.5 bits (63), Expect = 0.86
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 224 RHLKIVRRRFRNGFKEGKPTP 286
           RHL+ V  RFRNGF+   P P
Sbjct: 65  RHLRDVNARFRNGFRGTTPKP 85


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 49  SFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAA 156
           ++ K    TH  C +CG  + +    KC  CG P A
Sbjct: 93  TYNKNNFSTHHFCNKCGKVAQN--SKKCKHCGGPVA 126


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 49  SFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAA 156
           ++ K    TH  C +CG  + +    KC  CG P A
Sbjct: 165 TYNKNNFSTHHFCNKCGKVAQN--SKKCKYCGGPVA 198


>U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical
           protein C28G1.6 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/48 (25%), Positives = 17/48 (35%)
 Frame = +1

Query: 7   PDCQRVTTMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYP 150
           P C+      +  S   K  N  H +C  C    +   + KC  C  P
Sbjct: 4   PTCEICEESYRSESRIPKNLNCGHVICPVCASKLFENPEVKCPTCRQP 51


>L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical
           protein F44E2.6b protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 28  TMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPA 153
           T T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 40  TETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 81


>L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical
           protein F44E2.6 protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 28  TMTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPA 153
           T T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 47  TETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,410,491
Number of Sequences: 27780
Number of extensions: 129583
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)