Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N17
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   3.6  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   3.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   8.2  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    24   8.2  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    24   8.2  

>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 255 KYLINCLFFINVYSKLFGANNLLHIXSVLYVCTDFQCIFSYLPVCV 392
           K L  CL  IN+Y K+F   +   + +   VC  FQ +  Y  + V
Sbjct: 27  KALFGCLT-INIYLKIFTLISTPDLCNCRLVCRKFQQLCDYNSIYV 71


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 132 IDNTHINXVPAKKSQNSXLLTD 197
           ID+THI+ VP    +NS L  D
Sbjct: 469 IDDTHIHRVPIHDVENSELSAD 490


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 268 IVYFL*TYILNCSELTIFYIFXVYYMFVLIFNAFFR 375
           IVYFL     N     IFY+F +   F +  +A FR
Sbjct: 528 IVYFLSDLKRNARSFFIFYLFTIVITFCM--SAVFR 561


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 363 IENQYKHIIHXEYVKD 316
           IENQYKH+ H     D
Sbjct: 528 IENQYKHLAHDRSYTD 543


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 306 GANNLLHIXSVLYVCTD 356
           G  N+LHI  +L++C++
Sbjct: 601 GTGNVLHIQKLLHICSE 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,871
Number of Sequences: 5004
Number of extensions: 27943
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)