Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N17
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0592 + 5332067-5332233,5332326-5332488,5332572-5332642,533...    31   0.49 
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    27   6.0  

>05_01_0592 +
           5332067-5332233,5332326-5332488,5332572-5332642,
           5333311-5333420,5333457-5333528,5333599-5333634,
           5333635-5334071
          Length = 351

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 258 YLINCLFFINVYSKLFGANNLLH-IXSVLYVCTDFQCIFSYLPVCVC 395
           YL+ C+F + V   LF    +++ + +++   T+F C F Y   C+C
Sbjct: 159 YLMVCIFDLVVGGNLFTDKVVVYDLDNMMVGWTEFDCSFEYCVHCIC 205


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 144 HINXVPAKKSQNSXLLTD*KIN*FKCVRVPKNLLFPVKYLINCLFFINVYSKLFGAN 314
           H N   A+K + S L+   K++   C+   +N   P++ ++  LFF  + +   G N
Sbjct: 439 HPNLPKAEKRKISSLMDVKKLSKEACIHAAQNDRLPLRVVVQVLFFEQLRAAAGGNN 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,666,921
Number of Sequences: 37544
Number of extensions: 145216
Number of successful extensions: 206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)