Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N17
         (417 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   4.7  
AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1 ...    29   4.7  
AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1 ...    29   4.7  
AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP...    29   4.7  
AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protei...    29   4.7  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    27   6.3  

>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 10/50 (20%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 258 YLINCLFFINVYSKLFGANNLLHIXSVLYVCTD-FQCIFSYLPVCVCVCM 404
           Y   C++ + +YS  +  +  +++   +++C   + C+++++  C CVC+
Sbjct: 26  YTYTCMY-VCIYSHTY-IHTHVYVCVHIHICIHMYMCVYTHIYACTCVCV 73


>AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1
            protein protein.
          Length = 2156

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 247  NRRFLGTRTHLNQFIFQSVNNXEFCDFL 164
            N RF G+RT+LNQ + +++N   F + L
Sbjct: 2073 NNRFQGSRTNLNQVVRENINCHYFFEML 2100


>AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1
            protein protein.
          Length = 2156

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 247  NRRFLGTRTHLNQFIFQSVNNXEFCDFL 164
            N RF G+RT+LNQ + +++N   F + L
Sbjct: 2073 NNRFQGSRTNLNQVVRENINCHYFFEML 2100


>AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP1
            protein protein.
          Length = 2156

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 247  NRRFLGTRTHLNQFIFQSVNNXEFCDFL 164
            N RF G+RT+LNQ + +++N   F + L
Sbjct: 2073 NNRFQGSRTNLNQVVRENINCHYFFEML 2100


>AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protein 1
            protein.
          Length = 2156

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 247  NRRFLGTRTHLNQFIFQSVNNXEFCDFL 164
            N RF G+RT+LNQ + +++N   F + L
Sbjct: 2073 NNRFQGSRTNLNQVVRENINCHYFFEML 2100


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 27.1 bits (57), Expect(2) = 6.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 321 LHIXSVLYVCTDFQCIFSYLPVCVCVCM 404
           +++   +Y+C  F C+  Y+ V VC+C+
Sbjct: 83  VYVSVCMYLCV-FLCVCVYVSVSVCLCV 109



 Score = 20.6 bits (41), Expect(2) = 6.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 384 VCVCVCMTXLL 416
           VC+CVC++  L
Sbjct: 121 VCICVCVSVSL 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,252,052
Number of Sequences: 237096
Number of extensions: 870426
Number of successful extensions: 5117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5100
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)