Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N17
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132848-3|CAB60386.1|  327|Caenorhabditis elegans Hypothetical ...    28   3.1  
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine re...    27   7.2  

>AL132848-3|CAB60386.1|  327|Caenorhabditis elegans Hypothetical
           protein Y47H10A.4 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 286 FIKNKQFIKYLTGNRRFLGTRTHLNQFIF 200
           F+ NKQ +  LTGN+ F     HL   IF
Sbjct: 78  FVTNKQILTALTGNKPFTIHAIHLKGTIF 106


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 234 KNLLFPVKYLINCLFFINVYSKLFGANNLLHI-XSVLYVCTDFQCIFSYLPV 386
           +NLL   ++L    F   V    F A N LHI   V +   DF C  S++ V
Sbjct: 41  QNLLDSNQFLFEDSFLRTVLVSFFEAYNPLHIYFLVFFTVLDFFCNISFIVV 92


>AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine
           receptor, class x protein93 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 273 LFFINVYSKLFGANNLLHIXSVLYVCTDFQCIFSYLPVCVCVCMT 407
           +FF   YS++F  ++   I  ++Y+    Q I+ +LP     C T
Sbjct: 115 MFFPTKYSRIFSLSHTTIILVLIYLYRIAQKIYEWLPESAKGCYT 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,308,642
Number of Sequences: 27780
Number of extensions: 156252
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)