Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N16
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   124   7e-30
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   124   9e-30
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   2.5  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.5  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   5.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   5.9  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   7.8  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  124 bits (299), Expect = 7e-30
 Identities = 60/91 (65%), Positives = 71/91 (78%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           LTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQE ERER+D 
Sbjct: 24  LTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQ 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNI 397
           YVP VS LE D I V  DTKDMLK L +++I
Sbjct: 84  YVPEVSELEKDKINVDQDTKDMLKALGYDSI 114



 Score = 30.7 bits (66), Expect = 0.12
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKT K+A+ ++IEKYY  +   F
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDF 28


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  124 bits (298), Expect = 9e-30
 Identities = 62/102 (60%), Positives = 76/102 (74%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           LTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQE ERER+D 
Sbjct: 24  LTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQ 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQPATQ 430
           YVP VS LE D + V  DTKDMLK L ++ I  +++  PA Q
Sbjct: 84  YVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124



 Score = 30.7 bits (66), Expect = 0.12
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKT K+A+ ++IEKYY  +   F
Sbjct: 5   RTKTTKRASRVVIEKYYPRLTLDF 28


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 373 QHILGVGVYFDDVMFESRHXWDIVVTPLTLLFLKFDRD 260
           Q  L VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 210 PAILFLRGLVGMIAISSHILLFVSK 136
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 409 LQAINIVEVQHLQHILGVGVYFDDVMFESRHXWDIVVTPLTLLFL-KFDR-DSSHL 248
           L+  NI+E +++  +    +YF+  M  + + W I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 191 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEXERERRDNYVPXVSALEHDIIEV 349
           +R +IA F    A H ++R   S+    ++ + E   +R   Y+P +S    + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 164 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 256
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,177
Number of Sequences: 5004
Number of extensions: 30349
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)