Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N16
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            114   4e-26
10_07_0174 + 13815478-13815903                                        113   9e-26
06_01_0889 - 6807449-6809257                                           27   7.7  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  114 bits (274), Expect = 4e-26
 Identities = 56/99 (56%), Positives = 75/99 (75%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           +TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQE ERERR +
Sbjct: 24  MTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMD 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQP 421
           +VP  SALE D I V  +T DML  L   ++ G+ + QP
Sbjct: 84  FVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKTVKK +  +IEKYY+ +   F
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDF 28


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  113 bits (271), Expect = 9e-26
 Identities = 54/105 (51%), Positives = 75/105 (71%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           +TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQE ERERR +
Sbjct: 24  MTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMD 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQPATQCGY 439
           +VP  SALE + I V  +T +ML  L   ++ G++  Q  +   Y
Sbjct: 84  FVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKTVKK +  +IEKYY+ +   F
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMTLDF 28


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 236 LRHSQVRGI-SIKLQEXERERRDNYVPXVSALEHDIIE 346
           LRH Q R I ++ +    R R + YVP      HD+ E
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAE 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,703
Number of Sequences: 37544
Number of extensions: 183353
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)