Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N16
         (473 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...   181   5e-46
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...   181   5e-46
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...   181   5e-46
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...   181   5e-46
AE014134-2593|AAN10898.1|  208|Drosophila melanogaster CG31733-P...    28   7.4  

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score =  181 bits (440), Expect = 5e-46
 Identities = 90/110 (81%), Positives = 95/110 (86%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           LTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQE ERERRDN
Sbjct: 24  LTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDN 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQPATQCGYGGRRN 454
           YVP VSALE DIIEV  DTK+MLK+LDF+NI GLQLTQP T     GRRN
Sbjct: 84  YVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT--NNFGRRN 131



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKTVKKAA +IIEKYYT +   F
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLTLDF 28


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score =  181 bits (440), Expect = 5e-46
 Identities = 90/110 (81%), Positives = 95/110 (86%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           LTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQE ERERRDN
Sbjct: 24  LTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDN 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQPATQCGYGGRRN 454
           YVP VSALE DIIEV  DTK+MLK+LDF+NI GLQLTQP T     GRRN
Sbjct: 84  YVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT--NNFGRRN 131



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKTVKKAA +IIEKYYT +   F
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLTLDF 28


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score =  181 bits (440), Expect = 5e-46
 Identities = 90/110 (81%), Positives = 95/110 (86%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           LTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQE ERERRDN
Sbjct: 24  LTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDN 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQPATQCGYGGRRN 454
           YVP VSALE DIIEV  DTK+MLK+LDF+NI GLQLTQP T     GRRN
Sbjct: 84  YVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT--NNFGRRN 131



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKTVKKAA +IIEKYYT +   F
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLTLDF 28


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score =  181 bits (440), Expect = 5e-46
 Identities = 90/110 (81%), Positives = 95/110 (86%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           LTLDF TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGISIKLQE ERERRDN
Sbjct: 24  LTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDN 83

Query: 305 YVPXVSALEHDIIEVXPDTKDMLKMLDFNNINGLQLTQPATQCGYGGRRN 454
           YVP VSALE DIIEV  DTK+MLK+LDF+NI GLQLTQP T     GRRN
Sbjct: 84  YVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT--NNFGRRN 131



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKTVKKAA +IIEKYYT +   F
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLTLDF 28


>AE014134-2593|AAN10898.1|  208|Drosophila melanogaster CG31733-PB,
           isoform B protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -2

Query: 313 WDIVVTPLTLLFLKFDRDSSHLRVSETPH*MCG----KSSNFIPKRLGRNDSDFFTYSFI 146
           W+I+ + L LL   F R++ HL        +CG     +++ +   LGR D    +Y+FI
Sbjct: 56  WNII-SALVLLTALF-RENPHLLPVHLVTSLCGLMLEMTNHMVIASLGRTDYVLISYAFI 113

Query: 145 CIKIKC 128
            I   C
Sbjct: 114 MIACNC 119


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,352,741
Number of Sequences: 53049
Number of extensions: 317593
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)