Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N16
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   116   9e-27
AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    30   0.74 
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    30   0.74 
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    30   0.98 
U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    27   5.2  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    27   6.9  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  116 bits (279), Expect = 9e-27
 Identities = 56/92 (60%), Positives = 68/92 (73%), Gaps = 3/92 (3%)
 Frame = +2

Query: 125 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEXERERRDN 304
           +T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQE ERERRDN
Sbjct: 24  MTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDN 83

Query: 305 YVPXVSALEHD---IIEVXPDTKDMLKMLDFN 391
           Y+P +S ++      I+V  DT DMLK   FN
Sbjct: 84  YMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115



 Score = 35.5 bits (78), Expect = 0.020
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +1

Query: 67  RTKTVKKAAXIIIEKYYTTINT*F 138
           RTKTVKKA+ ++IEKYYT +   F
Sbjct: 5   RTKTVKKASRVLIEKYYTRMTNDF 28


>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 210 PAILFLRGLVGMIAISSHILLFVSKSSVNXCI 115
           P+I +L G +G++ I S+I L   K S   CI
Sbjct: 230 PSIFYLSGFIGVLFIFSYIFLGADKPSKQSCI 261


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 210 PAILFLRGLVGMIAISSHILLFVSKSSVNXCI 115
           P+I +L G +G++ I S+I L   K S   CI
Sbjct: 216 PSIFYLSGFIGVLFIFSYIFLGADKPSKQSCI 247


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 186 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRXRSVRGVTTMSXKCL 323
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  +  C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical
           protein B0034.5 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 207 AILFLRGLVGMIAISSHILLFVSKSSVNXC 118
           AI+    L+ +I+IS+++LLF+S    N C
Sbjct: 14  AIVIAGSLISIISISNNVLLFISLIRNNRC 43


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 208 WICHTFNEASQTLASARNLYQTSGXGA 288
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 359 TKDMLKMLDFNNINGLQL 412
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 204 LLDLPHI**GVSDTRKCEESLSNFRXRSVRGVTTMSXKCLLSNMTSS 344
           +L L H+      TRKCEE L +F  + ++    ++ K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,414,694
Number of Sequences: 27780
Number of extensions: 164643
Number of successful extensions: 378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)