Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N16
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   2.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 400 WPATNTASYPVWLWWQA 450
           W  ++  S+P  +WW+A
Sbjct: 171 WICSSAISFPAIVWWRA 187


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 432 HWVAGCVSCRP 400
           HW   CV+C P
Sbjct: 384 HWQMSCVACSP 394


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 75 FSPGHDPWLKLYSAAFDXNQREAE 4
          F+PGHD  + L+   ++   +E E
Sbjct: 26 FAPGHDAIVHLFEWKWNDIAKECE 49


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 190 RLGRNDSDFFTYSFIC 143
           RLGR  S +FT++  C
Sbjct: 324 RLGREISTYFTFTRPC 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,321
Number of Sequences: 438
Number of extensions: 2220
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)