Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N14
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   119   2e-28
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   6.7  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    24   8.9  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  119 bits (287), Expect = 2e-28
 Identities = 50/69 (72%), Positives = 58/69 (84%)
 Frame = +1

Query: 88  SERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 267
           SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+++LCQPTGG+ARL
Sbjct: 14  SEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARL 73

Query: 268 TEGCSFXXK 294
            EGCSF  K
Sbjct: 74  MEGCSFRRK 82


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = +1

Query: 1    LGRLSFSRLCIKRCNHACSQLICCILPLRSERRKHKLKRLVPHPNSYFMDVKCPGCYKIT 180
            +G+L    L  K   +   QL+C      S   KH+   L    + Y  D     CY  T
Sbjct: 3813 IGKLDIGLLMEKPTFYRILQLLCETSANHSTSLKHEFGTLNTLLSKYLTDQDAEDCYPAT 3872

Query: 181  TVFS 192
             + S
Sbjct: 3873 PIQS 3876


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 44  LQRLMHNLEKERRP 3
           LQR+ +NLEK+R P
Sbjct: 276 LQRVFYNLEKQREP 289


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -3

Query: 92  SERRGRMQQINCEQAWL--QRLMHNLEKE 12
           +E+R  + +  CE++WL  Q+L  ++E+E
Sbjct: 165 AEKRAAITKEECEKSWLEQQKLYKDMEQE 193


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 210 HHSLCVTKNCCNLVTARALNIHEIRVRMW 124
           +H+L   ++ C L  ++ L+ H I +R W
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKW 65


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 86  RRGRMQQINCEQAWLQRLMHNLEKE 12
           R+GR+ ++ CE   L+  +  L KE
Sbjct: 213 RKGRLDELMCENTALKEKIDKLNKE 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,843
Number of Sequences: 5004
Number of extensions: 29572
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)